Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00971 ATGTCTGACAAAGAAAATTTTGAGATAGATAGAAACGAAGATCATATGAGTTATTCGTCTAGTATGCCCTCTGATTGGAGATATGGGGTTGCTAATCTTGCAAATACATCAGTGGGTTTGGTGGATTCATATGTTTCAGGCTTCTGGGATCATTCCATGAGTTCCCAAAACTTGGGGTCATCATGTGACATCAATGTGCAGAACAACAATGGTAGCTCCTCAAGCTCAACTGGAAATAGAAAAGATGGTCTTGCTTTAGCTGGTCATGATAGGACACTTGAAATGGGTTGGAACCCAACAAGTTCTATTTTAAAAGGGGATGCTTTCTTACCAAACAGACCAACAATTTTCCCTCAGAGTTTGTCTCAGATTCCCACTGATTCTGCCTTTATTGAGAGAGCTGCAAGATTCTCATGCTTCAGTCAGTTCAATGGAGGGAATTTCAGTAGTATGATGAACTCATTTGGGATTCCCCAATCCACGGGTCTGTATGCTGGAAGAGATAATGCTCTTGCAGGCCATGGCTTAAAATCAGATCATGGAGCAAGTTCTCAGGATGTTCATGTTGGTGAATCTGCAAAAGATGTGTCGTCATCTGTTCAGAATTTGGCCACTAAAGGAAGTTCACTCAAGAATGAAAAGAGAAGTGAAAGCCTTGTGACATCTCAAGATGAAGCAAAACAGACTCTCGGCAGGTCTGTTAATGAGTCCGATAGAGCAGAATCAAGTGGTGGTGATGATGATGTTGGTAGTCCAAATGATATGCCGATGTTGGAGGGTACAACAAGTGGGGAACCTTCTAACAAAGGACTAGACGCAAAGAAAAGGAAAAGAAGTGGGCAGGATTCTGATAATGAAAAAACCAATGGAGGTTCTGAACCCCCAAGTGAGGCTGCAATGGACAGTTCTGAGAGCCGACAGAAGGGATACCAACAACCAACTTCAACAACCAAGACTTCTGGGAAGAATACCAAACAGGGGTCTCAAGCTTCTGATCCACCAAAGGAGGAATACATACATGTTAGAGCTCGCCGAGGTCAAGCAACGAATAGCCATAGCCTTGCAGAGAGAGTAAGGAGGGAAAAGATCAGTGAAAGGATGAAATTTCTTCAAGACCTTGTTCCTGGATGCAGCAAGGTGACTGGCAAGGCGGTTATGCTTGATGAAATCATTAACTATGTACAGTCACTTCAACGACAGGTTGAGTTTTTGTCTATGAAACTTGCAACTGTAAATTCACGGCTGGATTTTAGTCTTGAAGGACTTATTGCCAAAGATATGCTCCAGCAACGTTCTGGCCCCTCGTCTGCATTGAGGTTTTCTCCTGAAATGCCTTTGGTTTTTCCTCCTTTACATCCATCTCAACCAGGTGTTCTACCGTCAAATCTTCCTGGCATAGCGAACTCATCTGATATACTTCGAAGAACCATTCATCCACAGTTTACTCCCTCGGTCGGATTCAAGGATTCTAATCAGGTAACAATGCATCAGCAGGAGAAATGA 1503 0.4298 MSDKENFEIDRNEDHMSYSSSMPSDWRYGVANLANTSVGLVDSYVSGFWDHSMSSQNLGSSCDINVQNNNGSSSSSTGNRKDGLALAGHDRTLEMGWNPTSSILKGDAFLPNRPTIFPQSLSQIPTDSAFIERAARFSCFSQFNGGNFSSMMNSFGIPQSTGLYAGRDNALAGHGLKSDHGASSQDVHVGESAKDVSSSVQNLATKGSSLKNEKRSESLVTSQDEAKQTLGRSVNESDRAESSGGDDDVGSPNDMPMLEGTTSGEPSNKGLDAKKRKRSGQDSDNEKTNGGSEPPSEAAMDSSESRQKGYQQPTSTTKTSGKNTKQGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNSRLDFSLEGLIAKDMLQQRSGPSSALRFSPEMPLVFPPLHPSQPGVLPSNLPGIANSSDILRRTIHPQFTPSVGFKDSNQVTMHQQEK 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00971 500 MobiDBLite consensus disorder prediction 190 209 - -
Accr10g00971 500 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 222 434 IPR024097 GO:0006355
Accr10g00971 500 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 397 IPR011598 GO:0046983
Accr10g00971 500 Coils Coil 493 500 - -
Accr10g00971 500 MobiDBLite consensus disorder prediction 175 335 - -
Accr10g00971 500 Coils Coil 394 414 - -
Accr10g00971 500 MobiDBLite consensus disorder prediction 64 84 - -
Accr10g00971 500 MobiDBLite consensus disorder prediction 285 331 - -
Accr10g00971 500 FunFam Basic helix-loop-helix transcription factor 344 416 - -
Accr10g00971 500 Pfam Helix-loop-helix DNA-binding domain 350 398 IPR011598 GO:0046983
Accr10g00971 500 CDD bHLH_AtBPE_like 337 422 - -
Accr10g00971 500 MobiDBLite consensus disorder prediction 64 81 - -
Accr10g00971 500 Gene3D - 344 418 IPR036638 GO:0046983
Accr10g00971 500 MobiDBLite consensus disorder prediction 269 284 - -
Accr10g00971 500 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 416 IPR036638 GO:0046983
Accr10g00971 500 MobiDBLite consensus disorder prediction 231 245 - -
Accr10g00971 500 SMART finulus 353 403 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00971 Accr-Chr10 30259277 30262548 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00971 1 451 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 44.828 8.46e-103 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr10g00971 HLH 6.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00971 - - gmx:100797720 593.964