Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00970 ATGTCTGACAAAGAAAATTTTGAGATAGATAGAAACGAAGATCATATGAGTTATTCGTCTAGTATGCCCTCTGATTGGAGATATGGGGTTGCTAATCTTGCAAATACATCAGTGGGTTTGGTGGATTCATATGTTTCAGGCTTCTGGGATCATTCCATGAGTTCCCAAAACTTGGGGTCATCATGTGACATCAATGTGCAGAACAACAATGGTAGCTCCTCAAGCTCAACTGGAAATAGAAAAGATGGTCTTGCTTTAGCTGGTCATGATAGGACACTTGAAATGGGTTGGAACCCAACAAGTTCTATTTTAAAAGGGGATGCTTTCTTACCAAACAGACCAACAATTTTCCCTCAGAGTTTGTCTCAGATTCCCACTGATTCTGCCTTTATTGAGAGAGCTGCAAGATTCTCATGCTTCAGTCAGTTCAATGGAGGGAATTTCAGTAGTATGATGAACTCATTTGGGATTCCCCAATCCACGGGTCTGTATGCTGGAAGAGATAATGCTCTTGCAGGCCATGGCTTAAAATCAGATCATGGAGCAAGTTCTCAGGATGTTCATGTTGGTGAATCTGCAAAAGATGTGTCGTCATCTGTTCAGAATTTGGCCACTAAAGGAAGTTCACTCAAGAATGAAAAGAGAAGTGAAAGCCTTGTGACATCTCAAGATGAAGCAAAACAGACTCTCGGCAGGTCTGTTAATGAGTCCGATAGAGCAGAATCAAGTGGTGGTGATGATGATGTTGGTAGTCCAAATGATATGCCGATGTTGGAGGGTACAACAAGTGGGGAACCTTCTAACAAAGGACTAGACGCAAAGAAAAGGAAAAGAAGTGGGCAGGATTCTGATAATGAAAAAACCAATGGAGGTTCTGAACCCCCAAGTGAGGCTGCAATGGACAGTTCTGAGAGCCGACAGAAGGGATACCAACAACCAACTTCAACAACCAAGACTTCTGGGAAGAATACCAAACAGGGGTCTCAAGCTTCTGATCCACCAAAGGAGGAATACATACATGTTAGAGCTCGCCGAGGTCAAGCAACGAATAGCCATAGCCTTGCAGAGAGAGTAAGGAGGGAAAAGATCAGTGAAAGGATGAAATTTCTTCAAGACCTTGTTCCTGGATGCAGCAAGGTGACTGGCAAGGCGGTTATGCTTGATGAAATCATTAACTATGTACAGTCACTTCAACGACAGGTTGAGTTTTTGTCTATGAAACTTGCAACTGTAAATTCACGGCTGGATTTTAGTCTTGAAGGACTTATTGCCAAAGATATGCTCCAGCAACGTTCTGGCCCCTCGTCTGCATTGAGGTTTTCTCCTGAAATGCCTTTGGTTTTTCCTCCTTTACATCCATCTCAACCAGGTGTTCTACCGTCAAATCTTCCTGGCATAGCGAACTCATCTGATATACTTCGAAGAACCATTCATCCACAGTTTACTCCCTCGGTCGGATTCAAGGATTCTAATCAGCTACCTGAGATGTGGGAGGATGAACTGCACAATGTTGTACAGATGAGCTATGCACCAACTGCTCCACTGTGTAGTCAAGACGATGATGGTAACAATGCATCAGCAGGAGAAATGAAGGTTGAACTATGA 1605 0.4318 MSDKENFEIDRNEDHMSYSSSMPSDWRYGVANLANTSVGLVDSYVSGFWDHSMSSQNLGSSCDINVQNNNGSSSSSTGNRKDGLALAGHDRTLEMGWNPTSSILKGDAFLPNRPTIFPQSLSQIPTDSAFIERAARFSCFSQFNGGNFSSMMNSFGIPQSTGLYAGRDNALAGHGLKSDHGASSQDVHVGESAKDVSSSVQNLATKGSSLKNEKRSESLVTSQDEAKQTLGRSVNESDRAESSGGDDDVGSPNDMPMLEGTTSGEPSNKGLDAKKRKRSGQDSDNEKTNGGSEPPSEAAMDSSESRQKGYQQPTSTTKTSGKNTKQGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNSRLDFSLEGLIAKDMLQQRSGPSSALRFSPEMPLVFPPLHPSQPGVLPSNLPGIANSSDILRRTIHPQFTPSVGFKDSNQLPEMWEDELHNVVQMSYAPTAPLCSQDDDGNNASAGEMKVEL 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00970 534 MobiDBLite consensus disorder prediction 190 209 - -
Accr10g00970 534 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 397 IPR011598 GO:0046983
Accr10g00970 534 FunFam Basic helix-loop-helix transcription factor 344 416 - -
Accr10g00970 534 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 416 IPR036638 GO:0046983
Accr10g00970 534 MobiDBLite consensus disorder prediction 175 335 - -
Accr10g00970 534 Coils Coil 394 414 - -
Accr10g00970 534 MobiDBLite consensus disorder prediction 285 331 - -
Accr10g00970 534 MobiDBLite consensus disorder prediction 64 84 - -
Accr10g00970 534 Pfam Helix-loop-helix DNA-binding domain 350 398 IPR011598 GO:0046983
Accr10g00970 534 CDD bHLH_AtBPE_like 337 422 - -
Accr10g00970 534 MobiDBLite consensus disorder prediction 64 81 - -
Accr10g00970 534 Gene3D - 344 418 IPR036638 GO:0046983
Accr10g00970 534 MobiDBLite consensus disorder prediction 269 284 - -
Accr10g00970 534 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 222 434 IPR024097 GO:0006355
Accr10g00970 534 MobiDBLite consensus disorder prediction 231 245 - -
Accr10g00970 534 SMART finulus 353 403 IPR011598 GO:0046983
Accr10g00970 534 MobiDBLite consensus disorder prediction 513 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00970 Accr-Chr10 30259277 30262562 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00970 1 510 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 43.048 3.97e-106 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr10g00970 HLH 6.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00970 - - gmx:100797720 649.818