Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00925 ATGGCTGGAACATCGTGGTTGGTGGACAAAAGTAGAATAGCAACCAAAATAAAGAGTGCTTCTGGGGCATTTGATCCTGAGCAGGTTAAATGGAAAAGCAATCCTACCAGAGCTTGCCCAAATTGTCAAAACATAATCGATAACAGCGATGTAGCACAGGACTGGCCTGGATTGCCAAAGGGTGTGAAATTTGATCCATCAGATCAAGATATAATATGCCACTTGCTTGCTAAAGTTGGTATGGCAAATTCAAGACCTCATCCTTTCATTGATGAATTTATCACTACTCTTGAAGTGGATGATGGAATTTGTTATACTCATCCAAAACATTTACCAGGTGTTAATCAAGATGGAAGTGCAACCCACTTCTTCCATAGAGCAATCAAGGCATACAATACTGGTACTCGAAAGCGTAGAAAAATACATGGCCAGGATTTTGGTGATGTCCGCTGGCACAAGACTGGAAGAACTAAACCCGTAGTGTTGGACGGGGTTCAGAAGGGCTGTAAAAAGATTATGGTTCTTTATATGACCATGGTTAGAGGAGGTAAAGCAGAGAAAACTAATTGGGTTATGCATCAATATCACCTAGGAACACAAGAGGATGAGAAGGAAGGAGAGTATGTTGTCTCCAAAGTTTTTTACCAGCAGCAGCAGCAGGTTAAATCGGGGGATAAAGATGACCTGGGTATTCCTGCAAGAACCTTGGATGTTCCTGAAAGTTCCGAAAACATTAAAGCTGCAACAGTGCCAGTTGATCCGGTCACCCCCAAATCGGTGACCCCTGATCCACCTTGTACCAAAAGACCACATTCAAGCATTGACGTGGTTTTTGTTCCTCAGGATCCTCCAAAGGATTGTGTGGAAGATGCTTCTGAAGTAGTTTGTGAAGAACCAAAAACTGATGTACTCAAGGAAGAAAATCAAAATGATAATGAAGAAACAGATAATAATGAAAACGATGATGCTATTGAAGAACCTAAATGCCAATCTCCCAATAGAGATGACAATAGTGAAGAACATAAGATCCTACCTGGCCTTTCTGTCTATGCTCAACTAGGACCAGAGCATCTGAAAAAGGATCTTGAAGAATGCCAAGATCTTTCAAATATAGAACTCGATACGCCTCCTGACTTTCGACTAAGCCAGCTGGAGTTTAATTCACAAGATAGCTACATTTCCTGGGGTGGCAGCAAGGCAGGGAACTGA 1209 0.4185 MAGTSWLVDKSRIATKIKSASGAFDPEQVKWKSNPTRACPNCQNIIDNSDVAQDWPGLPKGVKFDPSDQDIICHLLAKVGMANSRPHPFIDEFITTLEVDDGICYTHPKHLPGVNQDGSATHFFHRAIKAYNTGTRKRRKIHGQDFGDVRWHKTGRTKPVVLDGVQKGCKKIMVLYMTMVRGGKAEKTNWVMHQYHLGTQEDEKEGEYVVSKVFYQQQQQVKSGDKDDLGIPARTLDVPESSENIKAATVPVDPVTPKSVTPDPPCTKRPHSSIDVVFVPQDPPKDCVEDASEVVCEEPKTDVLKEENQNDNEETDNNENDDAIEEPKCQSPNRDDNSEEHKILPGLSVYAQLGPEHLKKDLEECQDLSNIELDTPPDFRLSQLEFNSQDSYISWGGSKAGN 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00925 402 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 4 366 IPR044799 GO:0003700
Accr10g00925 402 Gene3D NAC domain 67 221 IPR036093 GO:0003677|GO:0006355
Accr10g00925 402 MobiDBLite consensus disorder prediction 286 311 - -
Accr10g00925 402 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Accr10g00925 402 MobiDBLite consensus disorder prediction 251 347 - -
Accr10g00925 402 MobiDBLite consensus disorder prediction 322 342 - -
Accr10g00925 402 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Accr10g00925 402 SUPERFAMILY NAC domain 44 216 IPR036093 GO:0003677|GO:0006355
Accr10g00925 402 FunFam NAC domain-containing protein 8 67 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00925 Accr-Chr10 29034908 29039973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00925 5 218 NAC Transcription Factor Family AT4G28500 52.273 8.50e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr10g00925 NAM 4.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00925 - - gmx:100799488 536.184