Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00919 ATGGATTCAAGTAGTTGTGTAGATGAAAGCACGACGAGTGATTCGGTGTCCATATCGCCTTCTCCGGCGATGACTGTGTCGCCGCTCAGCGGAACACCTCACAAGTCATCACCGCCGCCCCCCAATAGCCTCTGCAGGGTTGTTAGCGGAGCAAGTACTATTGTTGACTCCTCTGATGGCGGCGTTGAGGCTGAGTCCAGGAAACTGCCGTCGTCGAAATACAAGGGAGTGGTGCCGCAGCCTAATGGACGATGGGGGGCCCAGATATATGAGAAGCATCAGCGTGTTTGGCTTGGCACCTTCAACGAGGAAGATGAAGGCGCCCGGGCCTATGACATCGCCGCCCAGAGATTCCGCGGAAAGGACGCTGTCACCAACTTTAAGCCCCTCAACGTCAACAACTGCTCCGACGATGATGATTTTGAGACGGAGTTCCTCAACTCGCATTCCAAATCAGAGATCGTGGACATGCTGAGGAAGCACACCTACAATGACGAACTCGAGCAGAGCAAGCGCAACCGCGGGCTGGCCGGAGGAGGCCACGGAAAGTCGAGGAAGGACGGCGGCGCAGGCTTGTGCGTCGACCGGACTCAGAAAGCCCGCGACCAGCTGTTCGAGAAAATCGTCACGCCCAGTGATGTGGGGAAGCTGAATCGTTTGGTGATACCCAAGCAGCACGCGGAGAAGCACTTCCCGTTGCAGACCGGAGGCGCTTCTTGCGCGACGCCGGCGGCGGCGAAGGGGCTGCTCTTGAATTTCGAGGATGATGGAGGGAAAGTGTGGAGGTTTCGGTACTCGTATTGGAATAGTAGCCAGAGCTACGTGCTAACGAAAGGGTGGAGCAGGTTCGTGAAGGAGAAGAACCTGAAAGCCGGAGATACGGTGAGTTTCCACCGGTCGACCGGACCGGACCGGCAGCTCTACATTGACTGGAAAGCCCGGAATAACCAGACAGTCGGCGGTGAAGGTACGGGTATGGAGGGTCTGTACAATCCAGTTGGACCGGTGGTGGAGCCGGTTCAGATGGTTCGGCTCTTTGGGGTGAACATTTTGAAAATGCCGGCATCGGATTCTGTCATAGGCGGGGGCTGCCACAGCAAGAGGAAAGAGATGGAGCTCTTAACGTTTGAGTTTAGCAAGAAGCCAAAGATAATTGGAGCTTTGTAA 1167 0.5578 MDSSSCVDESTTSDSVSISPSPAMTVSPLSGTPHKSSPPPPNSLCRVVSGASTIVDSSDGGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEGARAYDIAAQRFRGKDAVTNFKPLNVNNCSDDDDFETEFLNSHSKSEIVDMLRKHTYNDELEQSKRNRGLAGGGHGKSRKDGGAGLCVDRTQKARDQLFEKIVTPSDVGKLNRLVIPKQHAEKHFPLQTGGASCATPAAAKGLLLNFEDDGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVSFHRSTGPDRQLYIDWKARNNQTVGGEGTGMEGLYNPVGPVVEPVQMVRLFGVNILKMPASDSVIGGGCHSKRKEMELLTFEFSKKPKIIGAL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00919 388 MobiDBLite consensus disorder prediction 1 47 - -
Accr10g00919 388 FunFam AP2 domain-containing protein RAP2.8 72 129 - -
Accr10g00919 388 MobiDBLite consensus disorder prediction 1 32 - -
Accr10g00919 388 ProSiteProfiles B3 DNA-binding domain profile. 205 315 IPR003340 GO:0003677
Accr10g00919 388 SMART B3_2 205 315 IPR003340 GO:0003677
Accr10g00919 388 SUPERFAMILY DNA-binding domain 72 128 IPR016177 GO:0003677
Accr10g00919 388 SMART rav1_2 73 134 IPR001471 GO:0003700|GO:0006355
Accr10g00919 388 CDD AP2 72 127 IPR001471 GO:0003700|GO:0006355
Accr10g00919 388 CDD B3_DNA 204 300 IPR003340 GO:0003677
Accr10g00919 388 Gene3D - 194 324 IPR015300 -
Accr10g00919 388 MobiDBLite consensus disorder prediction 165 191 - -
Accr10g00919 388 MobiDBLite consensus disorder prediction 55 74 - -
Accr10g00919 388 Pfam B3 DNA binding domain 205 312 IPR003340 GO:0003677
Accr10g00919 388 Gene3D AP2/ERF domain 72 129 IPR036955 GO:0003700|GO:0006355
Accr10g00919 388 Pfam AP2 domain 72 120 IPR001471 GO:0003700|GO:0006355
Accr10g00919 388 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 68 359 IPR044800 GO:0003700
Accr10g00919 388 SUPERFAMILY DNA-binding pseudobarrel domain 204 309 IPR015300 -
Accr10g00919 388 ProSiteProfiles AP2/ERF domain profile. 73 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00919 Accr-Chr10 28938226 28939392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00919 4 387 RAV Transcription Factor Family AT1G13260 57.732 2.46e-138 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Accr10g00919 B3 6.3e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00919 K09287 - gmx:100801107 513.457