Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00901 ATGAAGATATTCGTCAAGACTCTCAAGGGCACCAGCTTCGAAATCGAAGTCGAGCCTGAGGCTAAGGTTGCTGATGTGAAGAAACATATAGAAACTGTCCATGGTGAAACTTACTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAGGTTCTCAATGATAATACTACCTTGGAGGAAAATAAAGTAGTTGAACACAGTTTTGTTGTAATCATGGTATCCAAGACTAAGAGCTCATCAAGCCAGGGATCTACTACTGCACCTTCGGTTAAGGCTCCTCAGACTAGTTCAGCTCCTGCGCCATCCCCAGCGGCAACAGAAGCATCTCAAGCTCCTTCTACAGCTGGGGCTTCGCCTTCACCTTCACCTGCACCTGCACCTGCACCTTCACCGGCCCCAGCTCCTGCTGTGGAGGGGTCTGATATCTATGGGCAGGCAGCATCTAATCTTGTTGCTGGGAGCAACTTGGAGGGAACAATTCAACAAATTCTTGATATGGGTGGAGGGAGCTGGGATAGGGATACTGTTCTCCGAGCTCTGCGTGCTGCTTACAACAACCCTGAGAGAGCTGTTGAATACTTGTATTCAGGTATTCCAGAGCAAGCTGAAGCCCCCCCTGTGGCTCGTGCACCTGCAAGCGGGGCCCAGACAGGAAATGCTCCATCTGCAGCTCCACAAGAAGCACAACCTGCACCCGTACCTTCAAGTGGACCTAATGCTAATCCTTTAGATCTCTTTCCTCAGGGCGTGCCAAATGTTGGTGCTGGTGGAGCTGGTGCTGGCAATCTAGATTTTCTGCGCAACAGTCAACAGTTCCAAGCATTGCGAGCCATGGTTCAGGCTAATCCACAAATATTGCAGCCTATGCTTCAAGAGCTTGGGAAACAAAATCCTCATCTAATGAGATTGATTCAAGAGCATCAAGCTGACTTCCTTCGCCTGATAAACGAACCTATGGAAGGTGGTGAGGGGAATTTATTGGGGCAGCTGGCTAATGCCGTGCCACAATCAGTAACTGTCACCCCCGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGATTCGATCGAGCACTTGTTTTGGAGGTGTACTTTGCATGTAACAAAAATGAAGAATTGGCTGCTAACTACCTGTTGGATCACATGCACGAGTTTGAGGAATGA 1170 0.4872 MKIFVKTLKGTSFEIEVEPEAKVADVKKHIETVHGETYYPAAQQMLIHQGKVLNDNTTLEENKVVEHSFVVIMVSKTKSSSSQGSTTAPSVKAPQTSSAPAPSPAATEASQAPSTAGASPSPSPAPAPAPSPAPAPAVEGSDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVLRALRAAYNNPERAVEYLYSGIPEQAEAPPVARAPASGAQTGNAPSAAPQEAQPAPVPSSGPNANPLDLFPQGVPNVGAGGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPMEGGEGNLLGQLANAVPQSVTVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00901 389 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 155 198 IPR015940 -
Accr10g00901 389 SUPERFAMILY XPC-binding domain 260 326 IPR036353 GO:0003684|GO:0006289|GO:0043161
Accr10g00901 389 MobiDBLite consensus disorder prediction 76 118 - -
Accr10g00901 389 NCBIfam UV excision repair protein Rad23 1 388 IPR004806 GO:0006289
Accr10g00901 389 Gene3D - 255 320 IPR036353 GO:0003684|GO:0006289|GO:0043161
Accr10g00901 389 MobiDBLite consensus disorder prediction 206 253 - -
Accr10g00901 389 Pfam XPC-binding domain 264 319 IPR015360 GO:0003684|GO:0006289|GO:0043161
Accr10g00901 389 SUPERFAMILY UBA-like 325 387 IPR009060 GO:0005515
Accr10g00901 389 CDD Ubl_Rad23 1 74 - -
Accr10g00901 389 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 342 383 IPR015940 -
Accr10g00901 389 Gene3D - 337 384 - -
Accr10g00901 389 FunFam UV excision repair protein RAD23 1 80 - -
Accr10g00901 389 Pfam UBA/TS-N domain 160 195 IPR015940 -
Accr10g00901 389 Pfam UBA/TS-N domain 345 380 IPR015940 -
Accr10g00901 389 Gene3D - 150 200 - -
Accr10g00901 389 MobiDBLite consensus disorder prediction 119 135 - -
Accr10g00901 389 SMART ubq_7 1 75 IPR000626 GO:0005515
Accr10g00901 389 CDD UBA1_Rad23_plant 151 200 - -
Accr10g00901 389 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Accr10g00901 389 MobiDBLite consensus disorder prediction 76 140 - -
Accr10g00901 389 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 378 - -
Accr10g00901 389 Gene3D - 1 80 - -
Accr10g00901 389 SUPERFAMILY UBA-like 154 209 IPR009060 GO:0005515
Accr10g00901 389 SUPERFAMILY Ubiquitin-like 1 89 IPR029071 -
Accr10g00901 389 FunFam UV excision repair protein RAD23 B 254 320 - -
Accr10g00901 389 SMART CBM 262 305 IPR006636 -
Accr10g00901 389 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Accr10g00901 389 FunFam UV excision repair protein RAD23 homolog 150 200 - -
Accr10g00901 389 SMART uba_6 345 382 IPR015940 -
Accr10g00901 389 SMART uba_6 157 197 IPR015940 -
Accr10g00901 389 FunFam UV excision repair protein RAD23 homolog 336 384 - -
Accr10g00901 389 PRINTS DNA repair protein Rad23 signature 290 312 IPR004806 GO:0006289
Accr10g00901 389 PRINTS DNA repair protein Rad23 signature 356 370 IPR004806 GO:0006289
Accr10g00901 389 PRINTS DNA repair protein Rad23 signature 371 386 IPR004806 GO:0006289
Accr10g00901 389 PRINTS DNA repair protein Rad23 signature 339 355 IPR004806 GO:0006289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00901 Accr-Chr10 28588547 28595882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00901 1 68 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.706 7.14e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00901 K10839 - gmx:100809066 533.872