Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00896 ATGGTTAAGAAAAAACCTCAGCCAGTTATGTCGAGAAAACTGCGGATTATTTATAATGATCCTGAGGCTACAGATTCATCTTCAAGCGAAGAGGAAGAAGATGGGTGTGAAAACAGAAAGATGAGGATAAAGCTAGTCGTTCAAGAGCTCACACTACCACCCAAACCTCGCCCTCGTCTTCCCCAGAAGTCCCAGAAGACGGAGCCAGTTGAAACTGAAAGCTTTAATTGCCACTTTAATGGCAAGTCAAAATGTGAACCATTTAAACCTAAACGACGACCAAGAAGAAGTTCCTCTTCTCTGTACAGAGGCGTTCGACTCAGAAACTCTGGGAAATATGCCGCGGAGATTCGCCATCCCATTAAAGGTCGTAAATGGTTGGGTACTTTTGATACTGAAGAGGAGGCATCTCGAGCTTATGAAGCCGCAAGAAGAGAGTTTGAAGCCGTGGATTCTGTTACTGTTTCTCCATATTCATCAGATTCAGGCAGTGTTATTTCTCAGGCATCACCACCCTCTGTTCTTGAAGTTCGTACTTCAGTTGAGAATCGTCGTATTTCAAGGAAAGAAGTCGATCATTTTGCTTCTGCTCTTGCAGCTCTGCAAATGCCTGATTCGCTTTCGAATTCTTCAGAGGATCACAGGAATTCAGGGGATGAAGACAAGGATTTAGAATCTGGATTTGAAGCTCAACAAATCCCTGATTTGAGTTTGCAGAGAAATAACACTGAATTGATGTCAATCAAAGAAGAAGCGAAGGATTTGGCATCTGGGCTTGAAGCAAGTACGCAAATACCCGATTTGAGCATCATTTCAGAAGTGCCGATTCCAAAATGTTCTGAGCCTCACATGTTTGGTCTGGATTGTTTAACGGTGGATGATTTGAATCAGTGTTTTGACGATGACGATGATCTTTCTGGGTTGCTGGGTGGTGGAATTTGTGGGTTTAATGGTGTTGATGATGGGCCTTGTGAGCTTCCTGATTTTGATTTTGCAGATTTTGGTGCAGATGACGAGTTTGCAGGTTGGATTGAGGAACCCCTCAATATACCTTGTGCATGA 1062 0.4322 MVKKKPQPVMSRKLRIIYNDPEATDSSSSEEEEDGCENRKMRIKLVVQELTLPPKPRPRLPQKSQKTEPVETESFNCHFNGKSKCEPFKPKRRPRRSSSSLYRGVRLRNSGKYAAEIRHPIKGRKWLGTFDTEEEASRAYEAARREFEAVDSVTVSPYSSDSGSVISQASPPSVLEVRTSVENRRISRKEVDHFASALAALQMPDSLSNSSEDHRNSGDEDKDLESGFEAQQIPDLSLQRNNTELMSIKEEAKDLASGLEASTQIPDLSIISEVPIPKCSEPHMFGLDCLTVDDLNQCFDDDDDLSGLLGGGICGFNGVDDGPCELPDFDFADFGADDEFAGWIEEPLNIPCA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00896 353 SUPERFAMILY DNA-binding domain 100 147 IPR016177 GO:0003677
Accr10g00896 353 Gene3D AP2/ERF domain 101 155 IPR036955 GO:0003700|GO:0006355
Accr10g00896 353 ProSiteProfiles AP2/ERF domain profile. 101 157 IPR001471 GO:0003700|GO:0006355
Accr10g00896 353 MobiDBLite consensus disorder prediction 212 228 - -
Accr10g00896 353 CDD AP2 102 154 IPR001471 GO:0003700|GO:0006355
Accr10g00896 353 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 202 - -
Accr10g00896 353 Pfam AP2 domain 101 148 IPR001471 GO:0003700|GO:0006355
Accr10g00896 353 MobiDBLite consensus disorder prediction 202 235 - -
Accr10g00896 353 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Accr10g00896 353 PRINTS Ethylene responsive element binding protein signature 102 113 IPR001471 GO:0003700|GO:0006355
Accr10g00896 353 SMART rav1_2 101 163 IPR001471 GO:0003700|GO:0006355
Accr10g00896 353 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00896 Accr-Chr10 28287238 28288299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00896 7 352 AP2-EREBP Transcription Factor Family AT1G68550 34.454 1.39e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr10g00896 AP2 9.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00896 - - pcin:129311407 370.933