Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00893 ATGACTTCTTCTAAGAACTCCGCCGCCCACGCCGTCGGAGGCAAGACTGCCAGAGCCTGCGACAGCTGCATAAGGAAGCGTGCTCGCTGGTACTGTGCCGCCGACGATGCTTTCCTCTGCCAATCCTGTGACTCCCTCGTTCACTCCGCCAACCCATTGGCTCGCCGCCATGAAAGGCTCCGCCTTAAAACCTCCTCCTTTAAATCTTCCTCCTCCGTCAATCTCACTCTCGCTCCCTCCTGGCAACGTGGCATCACCAAGAAGGCTCGCACCCCTCGACATGGAAAGAACAACCACTCTTCCACCACCACCGCTGCCGCCCATCAAACCATCAGGAACCCCTTCCATCTCGTGCCGGAAGTGGCTTCCGATGAACATTCCAATTCTCATGAAGAAAATGAAGAGCAGCTTCTTTATCGGGTACCCATATTCGACCCCTTTGTAACAGAGCTTTGTGCTACTCCTCCATCCTCTGCAGCTTCAGCCGAAGCAGCAGTAACGGCCGATACGCCCCGTCCGAACCAGACAGAAAGCAATAAAGTCGCCTCATCGCCGGGAAACAAAAGCTATAATAGTCATAATGGGGTGGACAATTTACACGGCTTTCTTCCATCGGAAATGGAACTTGCTCAGTTTGCCGCCGATGTTGAGAGTTTATTGGGCAGGGGATTGGAGAATGAGTGTATAGGCATGGAGGATTTAGGGCTTATTGATAGTAAAGAGAAGGAGTCGAGGGAATATTCTGTGGGCAGTGAAAAAGTGAAGGTGGAAGAAGATGAAGAAGAGAGCCCGTGTAAGGGTGAAACGGATGAGATGGAGATTGGAATCAGAGAAGCATTTGAACTGAACTTCGATTACGACGACTCTCCGGCAGCAACAAGCGAACAACCAGACAATAACAACGACGAGGACGAGGACGAGAAGAAGGTCAATGAAGAAGAAGTCAAACCAAATAGTAATCAGAGAAAGAAGAAGATATTGTTGCAATTGGATTACGAAGCAGTCCTATCAGCTTGGGCATCTCAGAAATCTCCATGGACAACAGGTGGCAAACCAGACTTTGACGCCGACGAGTGTTGGCCGGGATGCATGGGTATGTGTGGAAAGGAGCTTCATCAGCCGTACTATGGAGAAATGGGAACATACCAGGTAGGGATGGGAGACGGAGGGAGAGAGGCGAGGGTGACGAGGTACAGAGAGAAGAGGAGGACGAGGTTGTTCTCGAAGAAAATAAGGTACGAGGTTCGCAAATTGAATGCAGAGAAGAGACCCAGAATGAAAGGGAGGTTTGTGAAGAGGGCTTCTTTTGCAGTTGCTAATACTAATAATACAACACCACCTTCCTCCTGCTCTTTGGGCAACAAATTACATTAA 1374 0.4978 MTSSKNSAAHAVGGKTARACDSCIRKRARWYCAADDAFLCQSCDSLVHSANPLARRHERLRLKTSSFKSSSSVNLTLAPSWQRGITKKARTPRHGKNNHSSTTTAAAHQTIRNPFHLVPEVASDEHSNSHEENEEQLLYRVPIFDPFVTELCATPPSSAASAEAAVTADTPRPNQTESNKVASSPGNKSYNSHNGVDNLHGFLPSEMELAQFAADVESLLGRGLENECIGMEDLGLIDSKEKESREYSVGSEKVKVEEDEEESPCKGETDEMEIGIREAFELNFDYDDSPAATSEQPDNNNDEDEDEKKVNEEEVKPNSNQRKKKILLQLDYEAVLSAWASQKSPWTTGGKPDFDADECWPGCMGMCGKELHQPYYGEMGTYQVGMGDGGREARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAVANTNNTTPPSSCSLGNKLH 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00893 457 MobiDBLite consensus disorder prediction 242 268 - -
Accr10g00893 457 MobiDBLite consensus disorder prediction 162 197 - -
Accr10g00893 457 CDD Bbox1_BBX-like 19 62 - -
Accr10g00893 457 Pfam CCT motif 391 433 IPR010402 GO:0005515
Accr10g00893 457 Pfam B-box zinc finger 17 59 IPR000315 GO:0008270
Accr10g00893 457 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Accr10g00893 457 ProSiteProfiles CCT domain profile. 391 433 IPR010402 GO:0005515
Accr10g00893 457 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 9 434 - -
Accr10g00893 457 SMART bboxneu5 15 62 IPR000315 GO:0008270
Accr10g00893 457 MobiDBLite consensus disorder prediction 287 322 - -
Accr10g00893 457 MobiDBLite consensus disorder prediction 87 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00893 Accr-Chr10 28193219 28194758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00893 7 433 C2C2-CO-like Transcription Factor Family AT1G25440 46.939 6.15e-106 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Accr10g00893 CCT 1.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00893 - - pcin:129311419 565.844