Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00880 ATGGAGAATTCGCCGCCGCGGATTGAAAAGTTTCCTTGGACTTCGAATTCCAGTTTCTCGGCTAAGGAGGGAAGAAGTGGGTATGAACCATCAGACACAGAGACAGAGAGACAAGACCCTCCCCGACATAAACGGGAAAGAAAGAATCTAACTTTAGGACATGAAGAAGCCAAAGTCCTCAACTTGAGGAGTAAAAGTCCCATGTCACTACACAGAAAGCATCCTTCTTCAAAGTTTGAACTAGAAATCTCATCTTCTGCATCTTCAGTAACAAGCTCAGCAGGAAGGAGACATCAAAGTAGATCGCCCTACCGGCCCTTCAGAGCCGCCGACGGTGACGCTCCATATCCCAAAAATGGTTTGGATAATGTTCAGACAAGTGTCAGCCCTGTGACAAAACCTGAATTTGCAAGAAGGCACACATCTCCATATCAACCTGAAAGAGAAAATCTCAATTGGAGATCAGAGAAAGCAAACCAGAGAAGAGCAATGACTGCTCCAAGGCAAAGGGGAGGAAGAGAACGGGAAGCATCATCCCATGGGACCAATCCTTCAATCGGAGAGATCAACGAGTTGGTTGCCCAGGCGAAATTCAAAAGAGATTCTATTACTGGTGACAGTGGTGAGCTCATAATAACAAGTACAGAGTCAAGTTTCGCAGGTGATATTTTCTTTTCTCGCGAGTATAATGCCATGACAAAGCAAAAGACCTTGTTAACAAAACCTCAAAAACTTGAGGTTGAAACCCAATTCAATAGCCCAAGGTTTAATAAGGTCCTTTCCCAAAGAGGAACCCCTTTTCATCATCAACATCAAAACAGAGCAAATGGTCATGTTAATAATGTGAACGTACGAGGTAGTTCATCATCTAGTACTACGATGTTGTCTCGACCGAGCACGGCCTCTAGTAATGGTGCTAAGAGCAAGAAGAGTTGTGCTAGTGGTAGTGTGAAGAGTGATGTGAGTTCGACGACAAGTGTGAGCATTCAGAAACTCATGGCGAACAGGAAAAAGAACCAAGCAGAGACATGGTTTGCTTGCATGAGAAGAGTAGGCAGGTCATCGAATAAATCGCCGGAACATCGATCGGTTGATGAGGCTTCTATCATTTACAAATCTTTTGTGCTCCAAAGCCTCCCACAATTCTGGGCAGATAAGTATCAACCCACGTCATTAGACGGCTTCATTTGCCACCAACAAGAAGCTCAGCTTCTCAAGGAATTAGTGTCTCAAGATGCGTGTCCTCACATTTTGCTGAAAGGACCAAGTGGTTCAGGAAAAAGAGCGCTAGCAATGGCTCTTCTGCAAGAAATATTTGGTGATGCAATATCAAATGAAAGGAGGCCAGTGAAGATCACTGTTCCTATAACGTCCAGCTCTCATCACATGGAGCTCAATGTAAATTTGGAACCTAATGCTAAATTTGCTTTAATGGGATTAGTCAAGGAAATAAGCACAGAATCTGCGATTACCCCTGAAGTCAGTAATTTGAATTTCAAGTCAGATTACAAAGTATTAGTTCTTTACGAGGTTGACAAGGCAGATAACAACATTCAATATATGATCAAATGGATTATAGATCGCTATTCTGATATATGCAAAATCATAGTTTGTTGCGAAGATGATGTGGACATTCTTGAACCGGTGAAAAACCGGTTCAAAATTATTAATATTGATGCTCCACCAACTCATGAAATTATGGATGTTCTTATTCAGATAGCAAAACAAGAAGAAATTGATCTGTCCATGAACTTTGCTGCTAAGATTGCCAATAAGTCAAAGCAGAATCTCAGGAAAGCAATCATGGCTCTTGAAGCATGCAGAGCACACAACTATCCATTTTCAGAAGAACAACCAATTCCCCTTGGATGGGAGGAGATTATAATGGAAATTTCTGTAGAGATACTATCTGATCCTTCACATTCACGCTTATTCTCAATCAGAGGGAAATTACAGAAGCTTCTGGGGGATTTTGTTCACCCCAACCTGATTCTCCGGAAACTGGTGGAACAACTCCTAAAAGGAATTGACAGCAACCTAAAAAGGGAGCTCTTCTACTGGCACGCTTATTATGACAAGAGACTCCCACCAGGAGCTACAGCTTTACTAAAATTAGAAGAATTTGTCGCCAAGTTTATGAGCATATACAGAAAAAGCACTAGCGGTCGACAGTTTGTGTAG 2181 0.4204 MENSPPRIEKFPWTSNSSFSAKEGRSGYEPSDTETERQDPPRHKRERKNLTLGHEEAKVLNLRSKSPMSLHRKHPSSKFELEISSSASSVTSSAGRRHQSRSPYRPFRAADGDAPYPKNGLDNVQTSVSPVTKPEFARRHTSPYQPERENLNWRSEKANQRRAMTAPRQRGGREREASSHGTNPSIGEINELVAQAKFKRDSITGDSGELIITSTESSFAGDIFFSREYNAMTKQKTLLTKPQKLEVETQFNSPRFNKVLSQRGTPFHHQHQNRANGHVNNVNVRGSSSSSTTMLSRPSTASSNGAKSKKSCASGSVKSDVSSTTSVSIQKLMANRKKNQAETWFACMRRVGRSSNKSPEHRSVDEASIIYKSFVLQSLPQFWADKYQPTSLDGFICHQQEAQLLKELVSQDACPHILLKGPSGSGKRALAMALLQEIFGDAISNERRPVKITVPITSSSHHMELNVNLEPNAKFALMGLVKEISTESAITPEVSNLNFKSDYKVLVLYEVDKADNNIQYMIKWIIDRYSDICKIIVCCEDDVDILEPVKNRFKIINIDAPPTHEIMDVLIQIAKQEEIDLSMNFAAKIANKSKQNLRKAIMALEACRAHNYPFSEEQPIPLGWEEIIMEISVEILSDPSHSRLFSIRGKLQKLLGDFVHPNLILRKLVEQLLKGIDSNLKRELFYWHAYYDKRLPPGATALLKLEEFVAKFMSIYRKSTSGRQFV 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00880 726 Gene3D - 381 561 IPR027417 -
Accr10g00880 726 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 380 706 - -
Accr10g00880 726 MobiDBLite consensus disorder prediction 268 320 - -
Accr10g00880 726 MobiDBLite consensus disorder prediction 140 177 - -
Accr10g00880 726 MobiDBLite consensus disorder prediction 27 61 - -
Accr10g00880 726 SUPERFAMILY post-AAA+ oligomerization domain-like 622 716 IPR008921 GO:0003677|GO:0006260
Accr10g00880 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 609 IPR027417 -
Accr10g00880 726 Gene3D - 563 620 - -
Accr10g00880 726 MobiDBLite consensus disorder prediction 1 186 - -
Accr10g00880 726 MobiDBLite consensus disorder prediction 9 24 - -
Accr10g00880 726 Gene3D - 623 716 - -
Accr10g00880 726 FunFam replication factor C subunit 3 562 620 - -
Accr10g00880 726 CDD AAA 399 556 - -
Accr10g00880 726 MobiDBLite consensus disorder prediction 80 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00880 Accr-Chr10 27960421 27965459 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00880 382 717 Core DNA Replication Machinery Family AT5G27740 41.261 4.97e-86 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00880 K10756 - gmx:100795321 744.577