Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00873 ATGGATCAAGGGCTTAAGCTTCCACTGATTCAGTCATCAGAAAGCCTAGAGGAGAATTCTTCTTCTTCTTCTCTACATTCTGCGGATTTTCCAGAAATGAGACAAAAGAAAGCAGTTGGATTCAAAAGGAAGAGGACAGAAGATAAACAGAAAGAAGTAATCCAAGTAAGGGCAAAAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTGAGAAGAGAGAGAATCAATGAGAAGCTGAGATGTTTGCAGGACATGGTTCCAGGCTGTTATAAGACAATGGGAATGGCAGTTATGTTAGATGTGATCATAAACTATGTTCTATCACTGCAGCAACAGATTGAGTTTCTCTCCATGAACCTCTCAGCAGCAAGCATGTACTTTGATTTCAACACCTACCAGTTAGATACCGTACAAGCCATGCAGAGAAGTATTGTCACAGATGGAATTCAAGGGATAGAAAGGATGGAAGGAGAAGGTTATGGAGGCTTTGCTTATTGGAATCCTACATGGCCACTTCAATAA 531 0.4087 MDQGLKLPLIQSSESLEENSSSSSLHSADFPEMRQKKAVGFKRKRTEDKQKEVIQVRAKRGQATDSHSLAERVRRERINEKLRCLQDMVPGCYKTMGMAVMLDVIINYVLSLQQQIEFLSMNLSAASMYFDFNTYQLDTVQAMQRSIVTDGIQGIERMEGEGYGGFAYWNPTWPLQ 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00873 176 MobiDBLite consensus disorder prediction 1 58 - -
Accr10g00873 176 SMART finulus 68 118 IPR011598 GO:0046983
Accr10g00873 176 Pfam Helix-loop-helix DNA-binding domain 66 93 IPR011598 GO:0046983
Accr10g00873 176 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 131 IPR036638 GO:0046983
Accr10g00873 176 MobiDBLite consensus disorder prediction 30 58 - -
Accr10g00873 176 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 21 138 IPR024097 GO:0006355
Accr10g00873 176 MobiDBLite consensus disorder prediction 1 29 - -
Accr10g00873 176 Gene3D - 62 125 IPR036638 GO:0046983
Accr10g00873 176 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 62 112 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00873 Accr-Chr10 27835760 27837183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00873 49 164 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 62.931 1.03e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr10g00873 HLH 3.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00873 - - pcin:129300422 270.011