Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00871 ATGTCTGCTATAACAAAGAGAGATAATAATAAAAACAAGATGTGTTGTAAAGAAGAAGAGAATAGTACTGAGATGAGAAGAGGCCCTTGGACTCTTGAAGAAGACAGCCTCCTCATTCACTATATCGCTCGCCACGGCGAAGGTCGTTGGAACATGTTAGCCAAAAGTGCAGGATTGAAGAGGAATGGCAAGAGTTGCAGACTCAGGTGGCTTAATTACTTGAAACCAGACATCAAGCGTGGAAACCTCACCCCACAAGAACAGCTCATGATCCTAGAACTCCATTCTAGGTGGGGTAACAGGTGGTCGAAAATTGCTCAGCATCTACCAGGAAGGACTGATAATGAGATCAAGAACTATTGGAGAACCAGAGTGCAGAAACAAGCTCGCCAACTTAATATTGAATCTGGAAGCAAGAAATTCATAGATGCGATTCGCTGTTTCTGGACTCCAAGATTAGTTCAAAAGGTTGAACAACAACAGAAACTGATCAATTCTCCTTCCACTACTACCACCTCGTATTCTTGTCTCACATCAGACACAAACCTTAATCATGTTTCTTCTTCTTCTTCATCATCTTCTCCAATGTTGTCGTCAACCAATTACAACAACAACAACATCAACTCTGTTATACCTAATCCTCTGTCCTGTTCTTCGTCATTGTCACCATCTTTTCAGCGGCCACCGGCAAATTTTCCCAGCAATTTTGCCTTTGATGATTCATGGAAATTCTCTCAGCTTCTGGAACTTTCTTCAGAAGTACTCCCAGAAAACGCTGCCTATATGTCCGAGAACAATAATGGTTGTTACAGCAACCCAATTCATCAGGAAAATTTGTTGGCGATGAACAATATGACTAGTACTGCTTCTGGGTATTATGGAATGGATCAGAATCTGATGAATCTGCAGGAACCTGCTGCGACTACGACAACAATGATGATGGAAACTTACGACGTGTTGCCGTTTGATTATTATTTTCATCAGCCAACAGCAGAAAGTGACTGGGCGTTAGGAAACATGGCAGACACTTTATGGAACATGGAAGCTCTGTAA 1053 0.4188 MSAITKRDNNKNKMCCKEEENSTEMRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRNGKSCRLRWLNYLKPDIKRGNLTPQEQLMILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKKFIDAIRCFWTPRLVQKVEQQQKLINSPSTTTTSYSCLTSDTNLNHVSSSSSSSSPMLSSTNYNNNNINSVIPNPLSCSSSLSPSFQRPPANFPSNFAFDDSWKFSQLLELSSEVLPENAAYMSENNNGCYSNPIHQENLLAMNNMTSTASGYYGMDQNLMNLQEPAATTTTMMMETYDVLPFDYYFHQPTAESDWALGNMADTLWNMEAL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00871 350 Gene3D - 27 79 - -
Accr10g00871 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Accr10g00871 350 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Accr10g00871 350 MobiDBLite consensus disorder prediction 1 20 - -
Accr10g00871 350 FunFam MYB transcription factor 84 147 - -
Accr10g00871 350 CDD SANT 84 123 IPR001005 -
Accr10g00871 350 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Accr10g00871 350 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Accr10g00871 350 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 21 200 IPR044676 GO:0003700|GO:0006355|GO:0043565
Accr10g00871 350 FunFam Myb transcription factor 27 79 - -
Accr10g00871 350 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Accr10g00871 350 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 42 51 IPR001345 GO:0003824
Accr10g00871 350 SMART sant 26 76 IPR001005 -
Accr10g00871 350 SMART sant 79 127 IPR001005 -
Accr10g00871 350 SUPERFAMILY Homeodomain-like 25 121 IPR009057 -
Accr10g00871 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 74 IPR017930 -
Accr10g00871 350 CDD SANT 29 74 IPR001005 -
Accr10g00871 350 Gene3D - 83 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00871 Accr-Chr10 27804121 27805388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00871 24 176 MYB Transcription Factor Family AT1G68320 77.124 5.23e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr10g00871 Myb_DNA-binding 6.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00871 K09422 - gmx:100780759 319.316