Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00856 ATGTCATTGTTGTGGCTTGGTCTCCTGATGGTATTTCTTCTGGTTTTTGCAGAGAAAACAGGAAAGGTCAAATTTCTAGTGGCAGTAGCAGTTTCAGCCGCTGGAGCTGTTGGAATACTATTGGTTTTGGGATTCTGCTTGAGACGACACTTTCACAAGAAGCAAAACCAGACCCATCTAATAATTGAGCAGTTTCTTGAAGCACATGGACACCTTGCAGCCAAAAGGTATACTTATTTGGAAGTAAAGAAAGCTACAAACAACTTCAAAAACAAGTTGGGTCAAGGAGCATTTGGCAGTGTATACAAAGGGAGGTTAAGTGATGGAACTCTTGTGGCAGTGAAAGTTCTAATTGAACTGAACAATGATGGTGAAGAATTCATCAATGAAGTTTCAAGCATTAGTGTTACTTCTCATGTCAACATTGTTGGCTTATTGGGTTTTTGCTTGGAGGGTTCAAAAAGAGCTCTGATATATGAGTACATGTCCAATGGATCTATTGACAAGTATATACAAAAACAAAACGATCCGTCAAAGATCAATCTCCAGTTGACTAGCAAAGCTATCTACAATATTGCAATTGGCGTTGCTCGTGGATTAGAGTACCTGCACAAAGGATGCAACACTAGGATTCTGCATTTGGACATAAAGCCTCACAACATATTGCTTGACGATGATTTTTGTCCTAAGATATCAGATTTTGGACTTGCAAAAATATGTCCGACGAATAAAGATAGCATTGTGTCATTGTTAGGTGCGAGGGGCACTGCAGGGTACATAGCGCCTGAAGTGTTTTCTAGGAACTTTGGTGGGGTGTCCCACAAATCTGATGTTTACAGTTTTGGGATGATGATGATGGAAATAGTAGGAGGAAGGAAGAAAATGAACATGGAAGTTGAAGGTTCCAGTGAAATATTCATGCCACATTGGATTCACCACCGTCTGAAATCAAACCTGGAGCTGAGGTTAGAGTGCATCAAGAATGAGAGGGATAGAGAATTAATCAAGAAGATAGTGATAGTGAGTTTATGGTGCATACAAATTGAGCCTTCGAATCGGCCGGCAATGAAGAAGGTGGTGGATATGATGGAAGGAGGCTTGGAGTTGCTGGAATTACCACCTTTGCCTGTTCTTTCTTTGCCTCCAATTACATCAACCTCTCCTAGTGTTTTAGAAGATCTTGTCTCTGGCAGCTTTTATTCTGTCTCGCTTAGTTCCTAA 1221 0.407 MSLLWLGLLMVFLLVFAEKTGKVKFLVAVAVSAAGAVGILLVLGFCLRRHFHKKQNQTHLIIEQFLEAHGHLAAKRYTYLEVKKATNNFKNKLGQGAFGSVYKGRLSDGTLVAVKVLIELNNDGEEFINEVSSISVTSHVNIVGLLGFCLEGSKRALIYEYMSNGSIDKYIQKQNDPSKINLQLTSKAIYNIAIGVARGLEYLHKGCNTRILHLDIKPHNILLDDDFCPKISDFGLAKICPTNKDSIVSLLGARGTAGYIAPEVFSRNFGGVSHKSDVYSFGMMMMEIVGGRKKMNMEVEGSSEIFMPHWIHHRLKSNLELRLECIKNERDRELIKKIVIVSLWCIQIEPSNRPAMKKVVDMMEGGLELLELPPLPVLSLPPITSTSPSVLEDLVSGSFYSVSLSS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00856 406 Gene3D Phosphorylase Kinase; domain 1 63 161 - -
Accr10g00856 406 ProSiteProfiles Protein kinase domain profile. 87 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00856 406 Coils Coil 316 336 - -
Accr10g00856 406 Gene3D Transferase(Phosphotransferase) domain 1 162 369 - -
Accr10g00856 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Accr10g00856 406 ProSitePatterns Protein kinases ATP-binding region signature. 93 115 IPR017441 GO:0005524
Accr10g00856 406 Pfam Protein kinase domain 90 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00856 406 FunFam PR5-like receptor kinase 162 374 - -
Accr10g00856 406 FunFam S-receptor-like serine/threonine-protein kinase 53 161 - -
Accr10g00856 406 SMART serkin_6 87 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00856 406 SUPERFAMILY Protein kinase-like (PK-like) 72 363 IPR011009 -
Accr10g00856 406 PANTHER RUST RESISTANCE KINASE LR10-RELATED 61 376 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00856 Accr-Chr10 27221539 27223112 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00856 36 387 Receptor kinase-like Gene Family AT5G38260 49.185 5.25e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Accr10g00856 Pkinase 3.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00856 - - gmx:100785979 499.59