Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00854 ATGCTTTCAGTTCGAGTGTTTTGCTACTTTCTCTTAGTTTCATTCCTTTGGGTTGGAGATGCATCAAAGTGCCCACTTTCATTTAACTGTGGCAATCTGGGGAAGCAAATTCAGTTTCCTTTTACCAGTTCAGATCGCCAAGATTGTGGCTTATTGGCCATTCATGGCTGTGGTGATGAAGACCCAAATTACCCAAAATTCATTAAGCACGCTGAAAACTGGTTTGAAGTTGTTGAACTCGGCCAGTCTAATACATTCACCATCAAAGACCAAGAAGTCCACGACCTTTTGCTGTCAGGTAGCTGTGGTGTCCTCACCCATTCTCTCCCTTTTTCTGATCCCGCAAACTCTGTTTTTGCTTCTTATCAATTAGAAAATAATTTCACCGTGTTCGAATGCAACAATACCCACAATCTTAATCCCATTGAGTCATACTCTAACTACAGTTTTGTTAACTGCTCAAAAGTCTTCTATAGAAAGTCACTTAATAATCTTGAGGGTGATGATGATGATGAGGCCTCCAGATTTTTGAACTCTTATTGTAAACGTGTTGAGGTTCCAATTGCAGAGAACATTGAGGTTGTTGATAATTCTTTTGTTTTACTATCTGAAAATATCACCATCAGAGTGCAGCTATCTCCTCAGTGTGATACTTGTCACTACGTTCATGGAGGGCAATGTCAAGATAGTAAGGGCAGGTTTTATTGTGCTAAAGAGAAAACAGGAAAGGTCAAATTTCTAGTGGCAGTAGCAGTTTCAGCCGCTGGAGCTGTTGGAATACTATTGGTTTTGGGATTCTGCTTGAGACGACACTTTCACAAGAAGCAAAACCAGACCCATCTAATAATTGAGCAGTTTCTTGAAGCACATGGACACCTTGCAGCCAAAAGGTATACTTATTTGGAAGTAAAGAAAGCTACAAACAACTTCAAAAACAAGTTGGGTCAAGGAGCATTTGGCAGTGTATACAAAGGGAGGTTAAGTGATGGAACTCTTGTGGCAGTGAAAGTTCTAATTGAACTGAACAATGATGGTGAAGAATTCATCAATGAAGTTTCAAGCATTAGTGTTACTTCTCATGTCAACATTGTTGGCTTATTGGGTTTTTGCTTGGAGGGTTCAAAAAGAGCTCTGATATATGAGTACATGTCCAATGGATCTATTGACAAGTATATACAAAAACAAAACGATCCGTCAAAGATCAATCTCCAGTTGACTAGCAAAGCTATCTACAATATTGCAATTGGCGTTGCTCGTGGATTAGAGTACCTGCACAAAGGATGCAACACTAGGATTCTGCATTTGGACATAAAGCCTCACAACATATTGCTTGACGATGATTTTTGTCCTAAGATATCAGATTTTGGACTTGCAAAAATATGTCCGACGAATAAAGATAGCATTGTGTCATTGTTAGGTGCGAGGGGCACTGCAGGGTACATAGCGCCTGAAGTGTTTTCTAGGAACTTTGGTGGGGTGTCCCACAAATCTGATGTTTACAGTTTTGGGATGATGATGATGGAAATAGTAGGAGGAAGGAAGAAAATGAACATGGAAGTTGAAGGTTCCAGTGAAATATTCATGCCACATTGGATTCACCACCGTCTGAAATCAAACCTGGAGCTGAGGTTAGAGTGCATCAAGAATGAGAGGGATAGAGAATTAATCAAGAAGATAGTGATAGTGAGTTTATGGTGCATACAAATTGAGCCTTCGAATCGGCCGGCAATGAAGAAGGTGGTGGATATGATGGAAGGAGGCTTGGAGTTGCTGGAATTACCACCTTTGCCTGTTCTTTCTTTGCCTCCAATTACATCAACCTCTCCTAGTGTTTTAGAAGATCTTGTCTCTGGCAGCTTTTATTCTGTCTCGCTTAGTTCCTAA 1884 0.4034 MLSVRVFCYFLLVSFLWVGDASKCPLSFNCGNLGKQIQFPFTSSDRQDCGLLAIHGCGDEDPNYPKFIKHAENWFEVVELGQSNTFTIKDQEVHDLLLSGSCGVLTHSLPFSDPANSVFASYQLENNFTVFECNNTHNLNPIESYSNYSFVNCSKVFYRKSLNNLEGDDDDEASRFLNSYCKRVEVPIAENIEVVDNSFVLLSENITIRVQLSPQCDTCHYVHGGQCQDSKGRFYCAKEKTGKVKFLVAVAVSAAGAVGILLVLGFCLRRHFHKKQNQTHLIIEQFLEAHGHLAAKRYTYLEVKKATNNFKNKLGQGAFGSVYKGRLSDGTLVAVKVLIELNNDGEEFINEVSSISVTSHVNIVGLLGFCLEGSKRALIYEYMSNGSIDKYIQKQNDPSKINLQLTSKAIYNIAIGVARGLEYLHKGCNTRILHLDIKPHNILLDDDFCPKISDFGLAKICPTNKDSIVSLLGARGTAGYIAPEVFSRNFGGVSHKSDVYSFGMMMMEIVGGRKKMNMEVEGSSEIFMPHWIHHRLKSNLELRLECIKNERDRELIKKIVIVSLWCIQIEPSNRPAMKKVVDMMEGGLELLELPPLPVLSLPPITSTSPSVLEDLVSGSFYSVSLSS 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00854 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Accr10g00854 627 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
Accr10g00854 627 PANTHER RUST RESISTANCE KINASE LR10-RELATED 279 597 IPR045874 GO:0004672
Accr10g00854 627 Gene3D Transferase(Phosphotransferase) domain 1 383 590 - -
Accr10g00854 627 FunFam PR5-like receptor kinase 383 595 - -
Accr10g00854 627 SUPERFAMILY Protein kinase-like (PK-like) 293 584 IPR011009 -
Accr10g00854 627 Pfam Protein kinase domain 311 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00854 627 Coils Coil 537 557 - -
Accr10g00854 627 Gene3D Phosphorylase Kinase; domain 1 284 382 - -
Accr10g00854 627 ProSiteProfiles Protein kinase domain profile. 308 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00854 627 SMART serkin_6 308 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00854 627 FunFam S-receptor-like serine/threonine-protein kinase 275 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00854 Accr-Chr10 27220697 27223112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00854 177 608 Receptor kinase-like Gene Family AT5G38260 43.929 1.73e-113 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Accr10g00854 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00854 - - gmx:100785979 631.713