LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr10g00852	ATGAGTAGCAATGGCCAATCTTCCTTTAACAGTCATTATGTCAGAGACTTAGTCTGCAACGCTGGTGCTGGTGCCTCGGCTGGGGCAATAGCGGCCACATTTGTGTGTCCATTGGATGTCATCAAGACTAGACTACAAGTTCATGGTCTTCCCCCTGGTCGGAAGGGTAGTGTTATCATCACGAGTTTGCAGAATATTGCAAGGACTGAAGGTTTCAGGGGACTGTACCGTGGACTTTCGCCGACAATACTAGCATTGCTGCCAAACTGGGCGGTTTACTTCACAGTTTATGAGCAACTAAAAGGCCTGCTTCGTACTCATGATGGTTGGCACCAACTCACAACTGGTGAAAATATGATAGCTGCTGCTGGTGCTGGAGCAGCCACATCAATTTCAACAAACCCATTGTGGGTTGTTAAGACCAGACTCCAAACACAGGGAATGAGGCCAGATGTTGTTCCTTACAAAAGTGTTGTTTCTGCTCTGACAAGGATTACCCGTGAGGAAGGCATACGAGGACTCTACAGTGGCATCTTGCCTTCATTGGCCGGCATAAGTCATGTTGCAATACAATTCCCATCTTATGAAAAGATTAAGTCATACATGGCAAAAAAGGAAAACACTACAGTTGACAAGCTAAGTCCTGGAAACGTTGCCATTGCATCTTCAATTTCCAAAGTAATAGCCTCTGTAATGACTTATCCTCATGAGGTGATACGATCCAGGCTACAGGCGCAAGGACAGTCCAAAAATATGAAGGTCCGGTATGCAGGGGTTGTTGATTGTACTAAGAAGGTCTTCCAGAAGGACGGCTTTCCAGGCTTTTATCGTGGTTGTGCTACCAATCTATTGAGAACAACTCCATCAGCTGTCATCACATTCACCAGTTACGAGATGATATACAGGTTCTTCCATCGTTTTGTACCTCAGGACAATGTATATCCGCAAGGCTATCCTAAAACTAATGATCTTAACAAGCCCAAGCCAGAAGACAGTGATGACATTAAGTTTGAAAAAGGCCCTATGGTATGA	1032	0.4486	MSSNGQSSFNSHYVRDLVCNAGAGASAGAIAATFVCPLDVIKTRLQVHGLPPGRKGSVIITSLQNIARTEGFRGLYRGLSPTILALLPNWAVYFTVYEQLKGLLRTHDGWHQLTTGENMIAAAGAGAATSISTNPLWVVKTRLQTQGMRPDVVPYKSVVSALTRITREEGIRGLYSGILPSLAGISHVAIQFPSYEKIKSYMAKKENTTVDKLSPGNVAIASSISKVIASVMTYPHEVIRSRLQAQGQSKNMKVRYAGVVDCTKKVFQKDGFPGFYRGCATNLLRTTPSAVITFTSYEMIYRFFHRFVPQDNVYPQGYPKTNDLNKPKPEDSDDIKFEKGPMV	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr10g00852	343	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085
	Accr10g00852	343	PRINTS	Mitochondrial carrier protein signature	222	244	IPR002067	GO:0055085
	Accr10g00852	343	PRINTS	Mitochondrial carrier protein signature	128	146	IPR002067	GO:0055085
	Accr10g00852	343	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Accr10g00852	343	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Accr10g00852	343	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	15	103	IPR018108	-
	Accr10g00852	343	Pfam	Mitochondrial carrier protein	213	305	IPR018108	-
	Accr10g00852	343	Pfam	Mitochondrial carrier protein	20	106	IPR018108	-
	Accr10g00852	343	Pfam	Mitochondrial carrier protein	113	205	IPR018108	-
	Accr10g00852	343	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	113	201	IPR018108	-
	Accr10g00852	343	FunFam	Nicotinamide adenine dinucleotide transporter 2, mitochondrial	16	304	-	-
	Accr10g00852	343	MobiDBLite	consensus disorder prediction	324	343	-	-
	Accr10g00852	343	MobiDBLite	consensus disorder prediction	318	343	-	-
	Accr10g00852	343	SUPERFAMILY	Mitochondrial carrier	16	299	IPR023395	-
	Accr10g00852	343	Gene3D	Mitochondrial carrier domain	110	307	IPR023395	-
	Accr10g00852	343	Gene3D	Mitochondrial carrier domain	2	109	IPR023395	-
	Accr10g00852	343	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	213	303	IPR018108	-
	Accr10g00852	343	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	16	309	IPR044712	GO:0006862\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr10g00852	Accr-Chr10	27163253	27168821	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr10g00852	1	331	Chloroplast and Mitochondria Gene Families	AT1G25380	67.761	3.56e-150	425

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr10g00852	K15115		-	gmx:100816376	530.791