Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00838 ATGGTTCTACCTGTTGATGTGTTCGTCTTCTTGTTCATGTTGGCTGACCATGTTCTTGCTCTATCTTCTGCTTCTGGAGAGTGCCCACCTTTCTTTCACTGTGGGAATCTGGGCAAGCTCTCGTTCCCTTACACCACTCCACAACGGAATCACTGTGGAATGTTGCCCATTCATGACTGTGAAGATGAACACCCCAACGCTGCAAAAACTGTGCTCTTTGGACAAAAGAAGTTTCAAGTGACGCAGATTGGAGGACCTTTCAACACTCATGTTTCCGTTAGGGACGCAGATTTAGAGAAACGTTTGGATAAAGAAGACTGTGAAGCCTTGTGCTGCAATATTACCCTTCCTCCGACCTCCCCCTTGGGTTCTTTCCAATTCATTCAAGACACTATAACCTTTTACAAATGCAACATTAGGCTCAAAGTTAGCCCTCCAAAGCGATTCCGGAAGTTTAGAGGGTGTGATAAGAGTAATAATGTCACCATCTTCTTTCGAACGCAAGATCAAGATGATCCTCCATCTTTTTTAGCAGAATGTCCAAGGGTTCAGCTTCCAGTAAATATGCTGGCTCTCTCTCCGGATCCTTTCAAATTCATAGCTTCTGAATTCTCCATTAGCATTCAAGTTTCTCCTGACTGTACTAAATGTTGTTTTGACGAAGGCTCCTGCCGGCTCAACAGCACCGGGGGATTTTATTGTTCCAAATACACAGGTTTTGGAGTGGGATTAGGAATTCTGTTACTAGCGATGGTGCTCTGCTTGGGACTCTACAAACAGAAACAGAGTGCTCTGTCACATGTCAGACTTCGATCAAGGAATCGGTACCCGAATAACGATGCAGACCCAGATGGCGGAAGACTCTTCTTTGGAGTCCCAATCTTCTCCTACATGGAGCTTCAAGACGCAACCAACAACTTTGACCTCTCCTATAAGCTAGGAGACGGCGGCTTCGGCTCAGTTTACTATGGGAAGCTTCAAGATGGGCGTGAAGTTGCAGTGAAGCATTTATTCAACCACAACTACAAACGAGTAGAACAATTCATGACCGAAGTTGATATCCTAACTCGGCTGCGTCACACAAACCTCGTATCCCTTTTTGGCTGCACTTCGCGTCAGAGTAGTGAGCTCCTCCTTGTCTATGAATACATACCAAATGGCACTCTTGCTAGTCACCTCCGTGGCGGCTCTGCAAATCCTGTGTTGCTGACTTGGCCTATGCGCATCAAAATCGCCATAGAAACTGCCACCGCTCTGGCTTACCTTCATGCCTCTGGCATCATCCACCGTGACGTAAAAAGCAACAACATTCTCCTTGACAATAATTTGTGTGTTAAGGTTGCAGATTTTGGACTTTCCAGGTTGTTCCCAGATGATGTGTCCCATGTTTCTACGGCTCCTCAAGGAACGCCAGGCTATCTTGATCCAGAGTATCACTATTGCTTTAGGCTAACCAATAAAAGTGATGTGTATAGTTTTGGGGTTGTGCTTATGGAGCTGATATCTTCAATGCCAGCCGTTGATATGGGAAGAAACAAAGATGAGATTACATTGGCAAATCTAGCATTGCGGAAGATTCAGAGGAATGAACTTGAGGAGCTGGTGGATCCATGTTTGGGGATAGAGAAGGACAGTGATGTGAAGAAGAAGGTGGTTGCTTTGGGGGAATTGGCATTTCAGTGTTTGCAGATAGATAAGGAGATGAGGCCTTCCATTGATGAGGTTTTAGAGGTTTTGAGGAAAATTGAGAGTGGGAAAGACGAAGAAGGTGAAGATTTAGAGGAAGAAGATAAAGGTACAATGAAGACTTCAATAAGCTATGAACAGGCAAAGTTGTTCAAGTCAGCATCTTCACCAACCGATATGACTAACGAGAAATGGGAGAATGGAGAAGTTGATAAGGGAAAGTTGTTTAGCGTTTGA 1923 0.4467 MVLPVDVFVFLFMLADHVLALSSASGECPPFFHCGNLGKLSFPYTTPQRNHCGMLPIHDCEDEHPNAAKTVLFGQKKFQVTQIGGPFNTHVSVRDADLEKRLDKEDCEALCCNITLPPTSPLGSFQFIQDTITFYKCNIRLKVSPPKRFRKFRGCDKSNNVTIFFRTQDQDDPPSFLAECPRVQLPVNMLALSPDPFKFIASEFSISIQVSPDCTKCCFDEGSCRLNSTGGFYCSKYTGFGVGLGILLLAMVLCLGLYKQKQSALSHVRLRSRNRYPNNDADPDGGRLFFGVPIFSYMELQDATNNFDLSYKLGDGGFGSVYYGKLQDGREVAVKHLFNHNYKRVEQFMTEVDILTRLRHTNLVSLFGCTSRQSSELLLVYEYIPNGTLASHLRGGSANPVLLTWPMRIKIAIETATALAYLHASGIIHRDVKSNNILLDNNLCVKVADFGLSRLFPDDVSHVSTAPQGTPGYLDPEYHYCFRLTNKSDVYSFGVVLMELISSMPAVDMGRNKDEITLANLALRKIQRNELEELVDPCLGIEKDSDVKKKVVALGELAFQCLQIDKEMRPSIDEVLEVLRKIESGKDEEGEDLEEEDKGTMKTSISYEQAKLFKSASSPTDMTNEKWENGEVDKGKLFSV 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00838 640 ProSiteProfiles Protein kinase domain profile. 307 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00838 640 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 8 623 IPR044652 GO:0004672
Accr10g00838 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 427 439 IPR008271 GO:0004672|GO:0006468
Accr10g00838 640 SMART serkin_6 307 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00838 640 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Accr10g00838 640 MobiDBLite consensus disorder prediction 613 640 - -
Accr10g00838 640 Gene3D Phosphorylase Kinase; domain 1 287 383 - -
Accr10g00838 640 PRINTS Tyrosine kinase catalytic domain signature 381 394 IPR001245 GO:0004672|GO:0006468
Accr10g00838 640 PRINTS Tyrosine kinase catalytic domain signature 421 439 IPR001245 GO:0004672|GO:0006468
Accr10g00838 640 PRINTS Tyrosine kinase catalytic domain signature 488 510 IPR001245 GO:0004672|GO:0006468
Accr10g00838 640 SUPERFAMILY Protein kinase-like (PK-like) 289 579 IPR011009 -
Accr10g00838 640 Gene3D Transferase(Phosphotransferase) domain 1 384 595 - -
Accr10g00838 640 Pfam Protein tyrosine and serine/threonine kinase 309 578 IPR001245 GO:0004672|GO:0006468
Accr10g00838 640 CDD STKc_IRAK 313 582 - -
Accr10g00838 640 FunFam Wall-associated receptor kinase-like 20 384 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00838 Accr-Chr10 26745741 26748099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00838 32 627 Receptor kinase-like Gene Family AT1G25390 41.762 2.17e-142 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Accr10g00838 PK_Tyr_Ser-Thr 6.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00838 - - aprc:113871893 594.349