Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00830 ATGGTTCTACCAGTTTATTTGTTCGTCGTCTTCTTCTTCTTTTCCCTGTTGCCTGACCATATTCTTGTTCTATCTTCTGATTCTGGTGGAGAGTGCCCACCTTCGTTTCACTGTGGGACTCTGGGCAACCTCTCGTTCCCATTCACCACTCCACAACGCAATCACTGTGGAATAATGCCCATTCAGGGCTGTGAAGATGAACACCCCAACGCTGCAAAAACTGTGTTCTTTGGAAAGAAGCATTTTCAAGTGAAGAATATAATGCCATTTTTCAACCTTACTCAAGTGTTTATTAGAGACGCAGATTTACAGAAGCGTTTGGAAAAAGATGAATGTGATGCTTTGTGCTACAATATTACTCTTCCTACAAGCTCACCCTTGGGTTCCTTTGATATCGTCCCGAATATAACCATGTACAAATGTAATAGCTCGCTCAATTACAATGTTTCAAAGCAATTCTTGAATTATACAGGTTGTGCTAAGAGTAATCATGAGACCATCTTCTTCCGATCCCAAGATCAAGATCATCCTCCACATTCTTTAGAAAAATGCTCAAGGGTTCATCTTCCAGTCAATATGATGGCCTTCTCTAGTGATCCATTCACATTCATTGCTTCTGACTTCTCCGTTAACATCAAACTTTCTGATGACTGTTTTTGGTGTTCTTCCATCAATAAAGGCATATGCCGCCTCAACAGCACCGGTGGATTTTATTGTTCCAAATTCAAAGGTTTTGGGTTGGGCCTAGGACCTCTGATATTAGCATTGGTGATCATCATCCGACTCTACAAACAGAAACAGAGTGCTCTGTCACATGTCAAACTCCAATCAACGAATCACTACCCAAACAATGAACCAGACCCAGACAGTGGTAGACTCTTCTTTGGAGTCCCCATCTTCTCTTATAATGAACTTAAAGATGCAACCAACAACTTTAACCCCTCCAACAAACTCGGAGACGGTGGCTTTGGCTGTGTTTACTATGGGAAGCTTCAAGATGGGCGTGAAGTTGCAGTGAAGCATCTATTCAACCACAACTACAAGAGAGTAGAACAGTTCATGACAGAAGTTGAGATCCTCACTCGCCTCCGTCACAAAAACCTTGTCTCCCTCTACGGCTGCACTTCACGTCAGAGCCGTGAGCTCCTCCTTGTCTATGAATACATCCCAAACGGAACCCTCGCCAGCCACCTCCGTGGCGGCTCTGCAAACCCTTCACTACTCACATGGCCTCTTCGAATCAAAATCGCCATAGAAACAGCAAGTGCTCTCTCTTACCTTCATGCGTCCGGCATCATCCACCGTGACGTCAAATCCAACAACATTCTCCTGGACAACAATTTTTGTGTCAAGGTTGCGGATTTTGGACTTTCCAGGTTGTTCCCGGACGATGTGTCGCATGTTTCTACGGCTCCACAAGGAACACCGGGTTATCTTGATCCAGAGTATTACTTTTGCTTCAGGCTGACCAATAAGAGCGATGTGTATAGTTTTGGGGTTGTGCTTATGGAGCTGATATCTTCAATGCCGGCCGTTGATATGGGAAGGAATAAAGATGAGATTACCTTGGGAGGTCTGGCGGTGAGGAAGATTCAGAGGAATGAATTTGACGAACTGGTGGATCCATGTTTGGGGATAGAGAAGGATAGTGAGGTGAAGAAGAAAGTGGCTGCTTTGGGGGAATTGGTGTTTCTGTGTTTGCAGATAGATAAGGAGATGAGGCCTTCCATTGATGAGGTTTTAGTGATTTTGAGGGAAATTGAGAGTGGGAAAGAAGGTGGAGACAGAGAGGAAGATAAAGAAGCTACAGTGAAGCGTTCAATAGGCTATAATCAGGCAAAGTTGTTCAAGTCATCATCTTCACCAAACACTGTTACTGTGAAATGGAGCAGTGGATGTCCTCCTAATTGCAGCGTTTAA 1920 0.4406 MVLPVYLFVVFFFFSLLPDHILVLSSDSGGECPPSFHCGTLGNLSFPFTTPQRNHCGIMPIQGCEDEHPNAAKTVFFGKKHFQVKNIMPFFNLTQVFIRDADLQKRLEKDECDALCYNITLPTSSPLGSFDIVPNITMYKCNSSLNYNVSKQFLNYTGCAKSNHETIFFRSQDQDHPPHSLEKCSRVHLPVNMMAFSSDPFTFIASDFSVNIKLSDDCFWCSSINKGICRLNSTGGFYCSKFKGFGLGLGPLILALVIIIRLYKQKQSALSHVKLQSTNHYPNNEPDPDSGRLFFGVPIFSYNELKDATNNFNPSNKLGDGGFGCVYYGKLQDGREVAVKHLFNHNYKRVEQFMTEVEILTRLRHKNLVSLYGCTSRQSRELLLVYEYIPNGTLASHLRGGSANPSLLTWPLRIKIAIETASALSYLHASGIIHRDVKSNNILLDNNFCVKVADFGLSRLFPDDVSHVSTAPQGTPGYLDPEYYFCFRLTNKSDVYSFGVVLMELISSMPAVDMGRNKDEITLGGLAVRKIQRNEFDELVDPCLGIEKDSEVKKKVAALGELVFLCLQIDKEMRPSIDEVLVILREIESGKEGGDREEDKEATVKRSIGYNQAKLFKSSSSPNTVTVKWSSGCPPNCSV 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00830 639 CDD STKc_IRAK 318 587 - -
Accr10g00830 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Accr10g00830 639 ProSiteProfiles Protein kinase domain profile. 312 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00830 639 Gene3D Phosphorylase Kinase; domain 1 289 388 - -
Accr10g00830 639 SMART serkin_6 312 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00830 639 FunFam Wall-associated receptor kinase-like 20 389 597 - -
Accr10g00830 639 SUPERFAMILY Protein kinase-like (PK-like) 289 584 IPR011009 -
Accr10g00830 639 Gene3D Transferase(Phosphotransferase) domain 1 389 600 - -
Accr10g00830 639 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Accr10g00830 639 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 295 388 - -
Accr10g00830 639 PRINTS Tyrosine kinase catalytic domain signature 493 515 IPR001245 GO:0004672|GO:0006468
Accr10g00830 639 PRINTS Tyrosine kinase catalytic domain signature 426 444 IPR001245 GO:0004672|GO:0006468
Accr10g00830 639 PRINTS Tyrosine kinase catalytic domain signature 386 399 IPR001245 GO:0004672|GO:0006468
Accr10g00830 639 Pfam Protein tyrosine and serine/threonine kinase 315 581 IPR001245 GO:0004672|GO:0006468
Accr10g00830 639 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 7 630 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00830 Accr-Chr10 26321635 26323977 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00830 36 639 Receptor kinase-like Gene Family AT1G25390 43.062 1.99e-148 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Accr10g00830 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00830 - - aprc:113871893 584.719