Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00822 ATGGATTCAAACACTTCAAGCTTTCTACTGAACTCTTCAACAACTTTTCACTCTGATTTCTACCATGGCAAAGAGGATGAAGTTGATGATCATGGCATGATTGATCTGGGACTTAGCCTCAGAACTGTCCAACCTGAAACTTATCATGCTTCTAGCAACTTTTTGAGTTTGTGGAGATATGATGATGACCTTTTGGATTGGCCAGCACAGTCTAATAATCTGAACAACCTCAAGAGCTCAAGCACAACAATACATTCTAAATCTGTTGCAGAAAACTTTGATGAAGAAATAGAAGGAGTTCAAAGCAATGATAGGTGGGCTTACGTGAAGGTTAATATGGATGGTGTTACAGTAGGCAGAAAAATCTGTGTCCTTGATCATGAAGGCTACCCAAGTCTTTCAAACCAGTTAGAGAACATGTTTGGAAGCAAATCTGTTTCTGGTTTGAAACTGTTTCAATCTGATTCAGAGTATTTACTGTTCTACAAAGACAGAGAAGATCATTGGAGAACTGTGGGTGATGTCCCATGGAAAGAATTTGTAGAAAGTGTGAAGAGGTTGAGGATTGCAAGAAAGAATAAAGCAGCCTAA 591 0.3875 MDSNTSSFLLNSSTTFHSDFYHGKEDEVDDHGMIDLGLSLRTVQPETYHASSNFLSLWRYDDDLLDWPAQSNNLNNLKSSSTTIHSKSVAENFDEEIEGVQSNDRWAYVKVNMDGVTVGRKICVLDHEGYPSLSNQLENMFGSKSVSGLKLFQSDSEYLLFYKDREDHWRTVGDVPWKEFVESVKRLRIARKNKAA 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00822 196 Pfam AUX/IAA family 70 195 IPR033389 -
Accr10g00822 196 Gene3D - 101 196 - -
Accr10g00822 196 ProSiteProfiles PB1 domain profile. 106 194 IPR000270 GO:0005515
Accr10g00822 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 62 195 IPR003311 GO:0005634|GO:0006355
Accr10g00822 196 SUPERFAMILY CAD & PB1 domains 105 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00822 Accr-Chr10 26090468 26091726 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00822 90 189 B3 DNA Binding Superfamily AT4G23980 33.000 4.08e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Accr10g00822 AUX_IAA 3.8e-24 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00822 K14484 - gmx:100793397 251.521