Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00821 ATGATGTTGAGGAGAAAAAGTCAGATAGTTTTTTTTAAGCTTCGGAGTTCGGGGGTGCCACTTATCTCCATGGATTCAAACACTTCAAGCTTTCTACTGAACTCTTCAACAACTTTTCACTCTGATTTCTACCATGGCAAAGAGGATGAAGTTGATGATCATGGCATGATTGATCTGGGACTTAGCCTCAGAACTGTCCAACCTGAAACTTATCATGCTTCTAGCAACTTTTTGAGTTTGTGGAGATATGATGATGACCTTTTGGATTGGCCAGCACAGTCTAATAATCTGAACAACCTCAAGAGCTCAAGCACAACAATACATTCTAAATCTGTTGCAGAAAACTTTGATGAAGAAATAGAAGGAGTTCAAAGCAATGATAGGTGGGCTTACGTGAAGGTTAATATGGATGGTGTTACAGTAGGCAGAAAAATCTGTGTCCTTGATCATGAAGGCTACCCAAGTCTTTCAAACCAGTTAGAGAACATGTTTGGAAGCAAATCTGTTTCTGGTTTGAAACTGTTTCAATCTGATTCAGAGTATTTACTGTTCTACAAAGACAGAGAAGATCATTGGAGAACTGTGGGTGATGTCCCATGGAAAGAATTTGTAGAAAGTGTGAAGAGGTTGAGGATTGCAAGAAAGAATAAAGCAGCCTAA 660 0.3909 MMLRRKSQIVFFKLRSSGVPLISMDSNTSSFLLNSSTTFHSDFYHGKEDEVDDHGMIDLGLSLRTVQPETYHASSNFLSLWRYDDDLLDWPAQSNNLNNLKSSSTTIHSKSVAENFDEEIEGVQSNDRWAYVKVNMDGVTVGRKICVLDHEGYPSLSNQLENMFGSKSVSGLKLFQSDSEYLLFYKDREDHWRTVGDVPWKEFVESVKRLRIARKNKAA 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00821 219 Pfam AUX/IAA family 93 218 IPR033389 -
Accr10g00821 219 SUPERFAMILY CAD & PB1 domains 128 212 - -
Accr10g00821 219 Gene3D - 124 219 - -
Accr10g00821 219 ProSiteProfiles PB1 domain profile. 129 217 IPR000270 GO:0005515
Accr10g00821 219 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 76 218 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00821 Accr-Chr10 26090184 26091726 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00821 124 212 B3 DNA Binding Superfamily AT1G59750 37.079 6.42e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Accr10g00821 AUX_IAA 5.2e-24 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00821 K14484 - gmx:100793397 251.521