Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00770 ATGGGGGATCACTTTGTATTGCTGGTTGATCGTTTGATCACTGAATCCACATTAGAAGCTGCACTTGAAAGCAGAACTCGTGCAATGCAGGAGGCTGCAGCCTCATCTGTGAATGAAGCAGAAGAAGTTATAAAGATGGGCATGGAAGATGTGAAATCTCCGAGGAAAATTGTTGAATGTCGGATATGTCATGATGAAGATGTTAATTCCAATATGGAGACACCCTGCTCCTGTTGTGGTAGCTTGAAGTATGCACACCGCAGATGTATACAAAGGTGGTGTAATGAGAAGGGTGACACTATCTGTGAGATATGCCACCAGCAATATAAACCTGGTTATACCGCTCCAACTTCATTATTTCGATTTGGACGAATTCCAATGACTTTCAGGGGAAATTGGGAGATTTCCAGAAGAGATTTGCACAATCAGGGTCGCTTGGTTCACATGGTTTCCACAGACGACCAGTATTCAGATTCTAGTGCTAGAAATTTACAGTTCTTTCGTGTGAATTTGATTGCTCTCATGTTCATGATTTTGTTTATTTTCAGACATACTCTTCCTCTCATAATCAGTGGAAACATGGACGATTCCATTTCTCTGTCTTTGGCGTTACTATTTCTAGCTGTGGTAATTCTTCCTCCCATATATTTAATTGTGAAAGCAGCAGTGACATCTATACAACGCCATCGGCGGCAGCGGCAACAACAGGAGCCTCCTAATGCCTCGGTCAACCTGTCGGATGATGAAACTGAGGAGCAAGTAGCTTTGCCGTCTCAGCTTCATGTTATTCATGTTCAGTGA 801 0.427 MGDHFVLLVDRLITESTLEAALESRTRAMQEAAASSVNEAEEVIKMGMEDVKSPRKIVECRICHDEDVNSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTICEICHQQYKPGYTAPTSLFRFGRIPMTFRGNWEISRRDLHNQGRLVHMVSTDDQYSDSSARNLQFFRVNLIALMFMILFIFRHTLPLIISGNMDDSISLSLALLFLAVVILPPIYLIVKAAVTSIQRHRRQRQQQEPPNASVNLSDDETEEQVALPSQLHVIHVQ 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00770 266 Pfam RING-variant domain 60 105 IPR011016 GO:0008270
Accr10g00770 266 SUPERFAMILY RING/U-box 58 110 - -
Accr10g00770 266 SMART ringv_2 59 106 IPR011016 GO:0008270
Accr10g00770 266 ProSiteProfiles Zinc finger RING-CH-type profile. 52 112 IPR011016 GO:0008270
Accr10g00770 266 FunFam Zinc finger family protein 48 115 - -
Accr10g00770 266 CDD RING_CH-C4HC3_MARCH 60 106 - -
Accr10g00770 266 MobiDBLite consensus disorder prediction 230 253 - -
Accr10g00770 266 Pfam Protein of unknown function (DUF3675) 111 221 IPR022143 -
Accr10g00770 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 116 IPR013083 -
Accr10g00770 266 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 235 IPR033275 -
Accr10g00770 266 MobiDBLite consensus disorder prediction 236 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00770 Accr-Chr10 23357729 23360292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00770 54 106 C3H Transcription Factor Family AT2G37950 42.857 4.41e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00770 - - vun:114190540 300.827