Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00769 ATGGAGGATGCTGAAGGAGTCCTCAGCTTCGATTTCGAGGGCGGTCTCGACACTGCTCCCGCCAACCCAGCGGTGCCTTCTGGACCTCTGGCCTCATCTGATTCTCCCGCCGTTGCTACCGCAGCAGCTAATGGTGTTACACCTGGCGCGGCTGACCCTGCTGCGAGCAACATTCCTGGCCGCCGGAGCTTCCGGCAGACAGTGTGCCGTCACTGGCTTCGTGGACTCTGCATGAAGGGCGATGCCTGCGGCTTCTTACACCAATATGACAAAGCGCGGATGCCCGTTTGCCGGTTTTTTAGATTATTCGGGGAGTGTCGGGAGCAGGACTGCGTATATAAGCACACAAACGAAGATATCAAGGAGTGTAACATGTACAAGTTGGGATTTTGTCCAAATGGTCCTGATTGCCGGTATAGGCATGCAAAATTGCCTGGACCTCCCCCTCCTGTTGAAGAAGTGCTTCAAAAGATTCAGCATTTATATTCTTACAATTATGCCAACTCTAACAAATTTTTCCAACAAAGAGGTTCTGGCTATTCTCAGCAAGCTGAGAAATCTCAGTTTCCACAAGGTCCTAATTCTGCAAGCCAAGCTGGGCCTGGAAAGCCATTAGCAGCAGAATCGGGCAATGTCCAGCAGCAGCAGCTACAGCCAATACAACAGGCTCAGCAGCAGGGTAGCAATAGTCAAATACAAAATACTACTAATGCCCAACCCAATCAGCCGAACAAAACATCAACACCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAACTTGGAGCTATCTGTTCAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAAGCTAAACTTATTGAAGCCTTTGACTCAGTGGAAAACGTGATATTGATTTTCTCAGTCAACAGAACTCGACATTTTCAGGGTTGTGCGAAGATGACATCCAGAATTGGGGGCTCTGCTACTGGGGGAAACTGGAAATATGCCCATGGAACTGCACATTATGGACGTAACTTCTCTGTTAAATGGTTGAAGTTATGTGAATTATCATTTCACAAGACTCGCCATTTAAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAAGAACTAGAACCTTCTATTGGTGAGCAGTTGGCATCCTTGCTATATCTTGAGCCAGATAGTGAGCTTATGGCTGTCTCACTTGCAGCAGAGTCTAAGAGAGAGGAAGAGAAAGCAAAGGGAGTGAATCCAGATCATGGAGGAGAAAATCCAGATATTGTTCCATTTGAGGACAATGAAGAGGAGGAAGAGGAGGAGAGCGATGAAGAGGAGGAGAGCTTTGGCCCAGGTGTTGGGCCAGCTGCTCAAGGCAGAGGTAGGGGTAGAGGTATGATGTGGCCTCCTCACATGCCTATGGGACGTGGAGCCCGGCCTATTCCAGGAATGCAGGGTTTTCCCCCAGTAATGATGGGAGATGGATTATCCTATGGACCAGTTACGCCGGATGGATTTGGTATGCCAGATCTATTTGGTATGGGCCCTCGTGGTTTTGGCCCCTATGGTCCTAGGTTCTCTAATGATTTTGCAGGGCCCCCAGCGGCGATGATGTTTCGTGGGCGACCCTCTCAACCTGGGATGTTTCCAGGTGGTGGGTTTGGGATGATGATGAATCCCGCACGTGCTCCCTTTATGGGCGGAATGGGGGCTCCAGGTGGGAATCCACCACGGGGCAGTAGACCAGGCGGTATGCCTCCAATGTTCATGCCACCACCGCAACATCAAAATGCTAACCGTGTTGCTAGGAGAGATCAAAGACCTAATGATCGGAATGATAGGTTTGGTCCAGGGCTAGAGCCGGGCAAGGGTCCAGACATGATGAGTCAATCAGGTGGACTTGATGATGACATGCAATACACAGGACGGGAGGATCAGTATGCTGTTGGAAACAACCTTAGAAATGAAGAGAGTGAAAGTGAGGATGAGGCACCTCGAAGATCTAGACATGGTGAGGGGAAAAAAAGAAAAGGTGAAGTCTAG 2043 0.4865 MEDAEGVLSFDFEGGLDTAPANPAVPSGPLASSDSPAVATAAANGVTPGAADPAASNIPGRRSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPVCRFFRLFGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQHLYSYNYANSNKFFQQRGSGYSQQAEKSQFPQGPNSASQAGPGKPLAAESGNVQQQQLQPIQQAQQQGSNSQIQNTTNAQPNQPNKTSTPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLIEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSATGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAVSLAAESKREEEKAKGVNPDHGGENPDIVPFEDNEEEEEEESDEEEESFGPGVGPAAQGRGRGRGMMWPPHMPMGRGARPIPGMQGFPPVMMGDGLSYGPVTPDGFGMPDLFGMGPRGFGPYGPRFSNDFAGPPAAMMFRGRPSQPGMFPGGGFGMMMNPARAPFMGGMGAPGGNPPRGSRPGGMPPMFMPPPQHQNANRVARRDQRPNDRNDRFGPGLEPGKGPDMMSQSGGLDDDMQYTGREDQYAVGNNLRNEESESEDEAPRRSRHGEGKKRKGEV 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00769 680 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Accr10g00769 680 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 59 119 - -
Accr10g00769 680 Gene3D ph1033 like domains 232 393 - -
Accr10g00769 680 Gene3D - 58 121 - -
Accr10g00769 680 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 34 672 IPR045168 -
Accr10g00769 680 MobiDBLite consensus disorder prediction 208 251 - -
Accr10g00769 680 MobiDBLite consensus disorder prediction 177 198 - -
Accr10g00769 680 ProSiteProfiles YTH domain profile. 255 390 IPR007275 GO:0003723
Accr10g00769 680 MobiDBLite consensus disorder prediction 579 593 - -
Accr10g00769 680 MobiDBLite consensus disorder prediction 600 617 - -
Accr10g00769 680 MobiDBLite consensus disorder prediction 409 467 - -
Accr10g00769 680 MobiDBLite consensus disorder prediction 567 680 - -
Accr10g00769 680 SUPERFAMILY CCCH zinc finger 65 88 IPR036855 GO:0046872
Accr10g00769 680 MobiDBLite consensus disorder prediction 429 448 - -
Accr10g00769 680 SMART c3hfinal6 119 143 IPR000571 GO:0046872
Accr10g00769 680 SMART c3hfinal6 63 89 IPR000571 GO:0046872
Accr10g00769 680 SMART c3hfinal6 91 117 IPR000571 GO:0046872
Accr10g00769 680 ProSiteProfiles Zinc finger C3H1-type profile. 63 90 IPR000571 GO:0046872
Accr10g00769 680 MobiDBLite consensus disorder prediction 655 680 - -
Accr10g00769 680 Pfam YT521-B-like domain 255 389 IPR007275 GO:0003723
Accr10g00769 680 CDD YTH 256 390 IPR007275 GO:0003723
Accr10g00769 680 MobiDBLite consensus disorder prediction 177 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00769 Accr-Chr10 23310382 23329421 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Accr10g00769 YTH 1.6e-44 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00769 K14404 - gmx:100802826 1013.45