Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00740 ATGGCCGGCGAAGCTGCCAGCGCCGTTGCCGGAGATCGTACTCCGGAGCTCATTGGTCTAGTTTATGACATTGTTGGAATGTGCGGTGGAGTTGGGGGATCCTCTTCTGCTACTGCTGTTTTAGCCGATACTATGTTCAAGAAGGACTGCACCGATCTGGTTCGTCGGATCTCTTTACTTACGTATTTGTTCGAGGAGATTAGGGACTCGAAGAAGGTCGTCATTGATTCTGGAAACTCGGATGCTTCTACTTCGTCCACTGGCTCTGCATCTTCCTGGTCCTCTGATCTGGTGCTCGCTCTCCACTCAGCTAAGCGCCTTATTTCAGTTGCTAGGAACTTCCGTTCTAATTCATCTTCTGATGGAGCTGCCAAGACAATTGTGTTCCAATTTCAGTGTGTCACATGGAAATTGGAAAAGCTATTGAGCGTCCTACCCTATGATGATCTAGACATATCAGAGGAAGTCAAGGAACAGGTGGAGTTGGTCAGAACACAATTGAGACGAGCCACCGAAAAATATGAATTTATGATTTCAAAGCTGTCATCTTTTGACTTATCTCAGCCAATGGATCTAGATATTAGTCAAAATCTTGGTAGATCTGTGAGTGGATTGCATAAACAGCATAGCTGTCCTGTTCATTTATCAGATTTAGAAAGCACTGCGAGAAGCAATGGATGGACAAGTTGCAGCACAAATCAGACAAGCCCTTGCTTGGAAAGGGCACAGAGCATCCCTGCATTGTCTGAGGTTTCATTATCAAATCTTCTTGATCCTGAAGGTCAAGAAAATTCTGTGAAAAAGGCTCTGACTGAAGTGAAAAAGCCCGAGGCAATTTGTGTTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATTGTGGCCACTGGTCAGACATATGAGAGATCTTACATCCAGAGATGGATAGATGGGGGCAATACAACATGTCCAAAAACTCAGCAGAAGCTCCAACATTTGACACTTACACCAAACTATGTGTTAAGGAGCCTTATAACTCAGTGGTGTATGGAGCACAATATTGAGCAGCCAACGGGACTTACAAATGGAAAGATAAAAAAGAGTGATGGGTCGTTCAGAGATGTTACGGGTGACATGGCAGCCATTGGAGCTCTTGTCCTGAATCTCTCTAGCCAGAACCTTGAGGAGCGTAGAGCAGCTGTTGCTGAAATTCGGTCACTTTCCAAACGAAGTACGGATAACAGAATACTAATTGCTGAAGCAGGAGCAATCCCAATTCTTGTGAACCTTTTAACATCAGAAGATGTGTTGACTCAAGAAAATGCTGTTACTTCCATTCTCAACCTCTCTATCTACGAGAACAACAAAGGACTTATAATGCTTGCTGGTGCCATCCCATCCATTGTCCAAATCCTTAGAGCTGGAAGTATGGAAGCAAGAGAGAACGCAGCAGCAACTCTCTTTAGCTTGTCACTTGCAGATGAGAACAAAATAATTATCGGTGCCTCCGGAGCTATCCTTGCTTTGGTTGAATTGCTCCAAAATGGGAGCCCTAGGGGGAAGAAGGATGCCGCAACAGCATTATTCAATTTATGCATATATCAAGGAAACAAGGGCAGGGCTATAAAAGCAGGGATCATTACAGCATTGTTGAAGATGCTTACAGATTCAAGCAAATCGATGGTCGATGAAGCCTTGACAATAATGTCGGTTCTTGCCAGCCACCAAGAAGCAAAAGTTGCTATTGTAAAGGCCAGCACTATACCTGTTCTTATCGATCTATTGAGGAACGGATTGCCTCGAAACAAAGAAAATGCAACTGCCATTTTACTTGCCTTGTGTAAGAGGGATCCTGAAAATCTGGCATGCATAAGCAGACTTGGTGCTATCTTACCTTTGACCGAACTCGCTCGAAGTGGCACGGAGAGGGCTAAAAGGAAGGCTACTTCACTATTAGAGCATCTTCGAAAGTTACAACATATTTGA 1983 0.4402 MAGEAASAVAGDRTPELIGLVYDIVGMCGGVGGSSSATAVLADTMFKKDCTDLVRRISLLTYLFEEIRDSKKVVIDSGNSDASTSSTGSASSWSSDLVLALHSAKRLISVARNFRSNSSSDGAAKTIVFQFQCVTWKLEKLLSVLPYDDLDISEEVKEQVELVRTQLRRATEKYEFMISKLSSFDLSQPMDLDISQNLGRSVSGLHKQHSCPVHLSDLESTARSNGWTSCSTNQTSPCLERAQSIPALSEVSLSNLLDPEGQENSVKKALTEVKKPEAICVPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDGGNTTCPKTQQKLQHLTLTPNYVLRSLITQWCMEHNIEQPTGLTNGKIKKSDGSFRDVTGDMAAIGALVLNLSSQNLEERRAAVAEIRSLSKRSTDNRILIAEAGAIPILVNLLTSEDVLTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLADENKIIIGASGAILALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIKAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRNGLPRNKENATAILLALCKRDPENLACISRLGAILPLTELARSGTERAKRKATSLLEHLRKLQHI 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00740 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 544 586 IPR000225 GO:0005515
Accr10g00740 660 Pfam U-box domain 281 352 IPR003613 GO:0004842|GO:0016567
Accr10g00740 660 Coils Coil 153 173 - -
Accr10g00740 660 PANTHER U BOX DOMAIN-CONTAINING 45 655 - -
Accr10g00740 660 Pfam Armadillo/beta-catenin-like repeat 493 531 IPR000225 GO:0005515
Accr10g00740 660 Pfam Armadillo/beta-catenin-like repeat 411 449 IPR000225 GO:0005515
Accr10g00740 660 SUPERFAMILY RING/U-box 281 355 - -
Accr10g00740 660 SUPERFAMILY ARM repeat 380 654 IPR016024 -
Accr10g00740 660 SMART arm_5 451 491 IPR000225 GO:0005515
Accr10g00740 660 SMART arm_5 410 450 IPR000225 GO:0005515
Accr10g00740 660 SMART arm_5 616 656 IPR000225 GO:0005515
Accr10g00740 660 SMART arm_5 533 573 IPR000225 GO:0005515
Accr10g00740 660 SMART arm_5 492 532 IPR000225 GO:0005515
Accr10g00740 660 SMART arm_5 574 614 IPR000225 GO:0005515
Accr10g00740 660 FunFam RING-type E3 ubiquitin transferase 458 558 - -
Accr10g00740 660 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Accr10g00740 660 Gene3D - 364 456 IPR011989 -
Accr10g00740 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515
Accr10g00740 660 CDD RING-Ubox_PUB 282 334 IPR045210 -
Accr10g00740 660 Gene3D - 457 558 IPR011989 -
Accr10g00740 660 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 355 IPR013083 -
Accr10g00740 660 Gene3D - 559 659 IPR011989 -
Accr10g00740 660 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Accr10g00740 660 FunFam RING-type E3 ubiquitin transferase 364 457 - -
Accr10g00740 660 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 462 504 IPR000225 GO:0005515
Accr10g00740 660 FunFam RING-type E3 ubiquitin transferase 560 659 - -
Accr10g00740 660 FunFam RING-type E3 ubiquitin transferase 280 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00740 Accr-Chr10 21903552 21906499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00740 27 656 U-box Gene Family AT1G23030 61.502 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00740 - - gmx:100815448 975.311