Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00666 ATGGCTGGTGAGTTGTGTGGAGACAAATCGAGGGAGATGGTATCATCGTCAGCTGGATTCTGCTACTCAGAGGTATCAACGGGCAACCCGACGGCGATCCAAACTCATATGGGGAGTCATCATCATAATCAGATCCAAGGGTTTGAATCCGACCCGGCGGACATGTTCAACCTCACAACCAGCATGGACATGATTGGCTTCCCCAACAGGAATATTCACCACCACCACAGCACTGAAAGTAGCAACCTCGTTTGGAAAAGCTTCCTGGGTAAACCCACCACCCACCACCACAATCCTGCGGGTCCTTCTTCTTCTTCCTCCAAGACGGCGACCACCGTGAATAATAATGAGTCTGGTTCCACCAATTTCTATCATCACTACACTAAACCAGATTTCACTTCCAGCGAAAATCTAATTGTGGGAGAAGCTCATCATCATCATCATCATGATTCTTCGTCTGCCTCTTGGCAAGATAACAGGTTACTTGTGGATGATTCTTCTTTAAGGTGTGTGTTCCCTTGTGAAGGAAACGAAAGGCCAAGCCAAGGCCTTTCTCTCTCTCTGAGTTCCAATAATCCCTTAAGCATTGGATTACAATCTTTTGAACTAAGACAGACCAACAACCACCAATCAGACTTTGTTTCTTCTGGAGACAAGATACTGCTGGGAAAATCTATGAATCCCGAACAACAACAAGAAGCTGGGAATAATATGTATCAAGGCCATTTTCTGATTAAGAACTCTAAGTATTTGGTCCCTGCACAGGAACTTCTCAACGAATTTTGCAGCCTGGGAACGAAGCAAAGTGACTTAGTAAAGCAAAAGTCAACATCAAGTCAGAAAAACAAACAGTGGGAAGATGATAATAATGGAATCGGACCCTCCAAGAAGCATCCCGTTGGCTCTCTAGAATTCATCGAATTACAGAAGGGAAAGACCAAACTACTCTCCATGCTTGAAGAGGTTGAGAGGAGATACAGGCACTACTTGAACCAAATGAAGGCAGTGGTGTCTTCGTTTGAGGCGGTGGCCGGTGCCGGAGCGGCGAGGGTTTACTCGGCGTTGGCATTGAAGGCGATGTCGAGGCATTTCAGGTGTTTGAAAGATGGGATATTGGGTCAGATAGAAGTAGCAAGGAGAGGGATGGGAGAGAAAGATCCAGTTGCACCAGGAACCACAAGAGGCGAAACACCAAGACTCAGAATCATTGACCAAACTCTCAGACAACAGAGAGCTTTCCAACAAATGAGCATGATGGAGAGCCATCCATGGCGGCCCCAACGAGGCCTCCCCGAACGATCCGTCTCAGTTCTTCGAGCTTGGCTCTTCGAGCATTTCCTTCATCCGTACCCAAGTGATATGGATAAACATATCTTAGCTCGCCAAACTGGTCTCTCAAGAAGCCAGGTTTCAAACTGGTTTATTAATGCAAGAGTGAGGCTGTGGAAGCCAATGGTGGAAGAGATGTACTTGGAGGAAATGAAGGAACATGAAAACAACAAGGCTTCTTCTGAGGGAATCACCGATCCTGCCACTGTCGAGGATGACGGCAACATCTTGGCCGCTGCTGGAAACCCGCCGCCGCCTCTGAGCGCACGTCTGGTGGATCAGAAGCCGCTCCAGAATCATCGGTTGCTTCGAATAGATTCCGAGTGTGTGTCTTCTATCATAAACAACCAGCCAGATCACCACAAAAACGCATCCACCAAGAACAATAATAATCCCCATCAAGATCATCAACAGTGTGGTGGTACATTTGGATCTGTGGAGCTTGATTTTTCATCTGATAACACTCATCCCAACTCAGCTGCCGGGGGCATGGTTTCTTACAGTAATGAGAATGGGAGTAATAGTAATCGTCATCAGAATTATAACAATGGAGGTGTTTCTTTGACGCTAGGGTTACAGCAACACGGCGGAACTGGGGTGAGTCTGGCATTTCCTCCGCCGTCTCAGGCTTCACTGTTCTATCCAAGAGATCAAATGGAAGATTGCCAACCTGTTCAGTACTCGCTTTTGGACGGTGAAGCACAAAATCTTCCTTACAGAAATTTAATGGGGGCACAGTTGCTCCATGACTTGGCAGGATAA 2091 0.4687 MAGELCGDKSREMVSSSAGFCYSEVSTGNPTAIQTHMGSHHHNQIQGFESDPADMFNLTTSMDMIGFPNRNIHHHHSTESSNLVWKSFLGKPTTHHHNPAGPSSSSSKTATTVNNNESGSTNFYHHYTKPDFTSSENLIVGEAHHHHHHDSSSASWQDNRLLVDDSSLRCVFPCEGNERPSQGLSLSLSSNNPLSIGLQSFELRQTNNHQSDFVSSGDKILLGKSMNPEQQQEAGNNMYQGHFLIKNSKYLVPAQELLNEFCSLGTKQSDLVKQKSTSSQKNKQWEDDNNGIGPSKKHPVGSLEFIELQKGKTKLLSMLEEVERRYRHYLNQMKAVVSSFEAVAGAGAARVYSALALKAMSRHFRCLKDGILGQIEVARRGMGEKDPVAPGTTRGETPRLRIIDQTLRQQRAFQQMSMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDMDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEMKEHENNKASSEGITDPATVEDDGNILAAAGNPPPPLSARLVDQKPLQNHRLLRIDSECVSSIINNQPDHHKNASTKNNNNPHQDHQQCGGTFGSVELDFSSDNTHPNSAAGGMVSYSNENGSNSNRHQNYNNGGVSLTLGLQQHGGTGVSLAFPPPSQASLFYPRDQMEDCQPVQYSLLDGEAQNLPYRNLMGAQLLHDLAG 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00666 696 SMART HOX_1 424 488 IPR001356 GO:0003677
Accr10g00666 696 SUPERFAMILY Homeodomain-like 425 491 IPR009057 -
Accr10g00666 696 Pfam Homeobox KN domain 441 480 IPR008422 GO:0003677|GO:0006355
Accr10g00666 696 ProSiteProfiles 'Homeobox' domain profile. 421 484 IPR001356 GO:0003677
Accr10g00666 696 MobiDBLite consensus disorder prediction 560 587 - -
Accr10g00666 696 MobiDBLite consensus disorder prediction 89 122 - -
Accr10g00666 696 Pfam Associated with HOX 245 371 IPR006563 -
Accr10g00666 696 Gene3D - 427 489 - -
Accr10g00666 696 SMART prehox3 239 373 IPR006563 -
Accr10g00666 696 Coils Coil 312 332 - -
Accr10g00666 696 FunFam BEL1-like homeodomain protein 4 427 489 - -
Accr10g00666 696 MobiDBLite consensus disorder prediction 272 298 - -
Accr10g00666 696 MobiDBLite consensus disorder prediction 97 122 - -
Accr10g00666 696 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 121 504 - -
Accr10g00666 696 MobiDBLite consensus disorder prediction 272 289 - -
Accr10g00666 696 CDD homeodomain 424 485 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00666 Accr-Chr10 17473650 17476493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00666 152 695 Homeobox Transcription Factor Family AT5G41410 46.374 1.56e-139 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Accr10g00666 POX 2.7e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00666 - - pop:7472750 796.964