Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00644 ATGTTTCCAACTCGCAAAATGAGCTCTAGCAAATCCTTTAAAGAGAAAAACCGGCCAAGCCAAGAGCAAGAAAATTGGCCTGAGAAGGGGCAAAATAGCAATACGTTGCCTAGACGGGCGTATTATAAAAAAGTGGTGTATGATGGGGGTGAGTTTGAAGTAGGCAATGATGTATATCTGAAGAGGAGAGAAGATACCGACTCAGATAACGAATATCCAGAAGTGGAGGAATGTAGGTTGTGTTTTAGTTCTGCGGACGATGTTATGATTGAGTGTGATGATTGTTTAGGTGGCTTTCATTTGAAGTGTTTGACTCCACCATTGAAGGAGGTTCCGGAAGGAGATTGGATTTGTGGGTTTTGTGAGGCTCATAAGATAGGCAGAGACGTTAGTTTTCCCATGCCTCCGGAGGGCAAGAAGCTAGTTAGGACATTGAGGGAGAAGCTTCTTTCCAGCGATTTGTGGGCTGCTCACATTGAAAGTATTTGGAAAGAAGGGGATGGTACCTATTATTGTAGTGTCAGGTGGTATGTGATCCCAGAAGAGACAGCTATTGGGAGACAGCCTCATAATCTGAAGAGGGAGCTATATAGAACAAATGATTTTGCAGACATTGAAGTGAAAAAGATGATAACTTCTTTTTAG 645 0.4248 MFPTRKMSSSKSFKEKNRPSQEQENWPEKGQNSNTLPRRAYYKKVVYDGGEFEVGNDVYLKRREDTDSDNEYPEVEECRLCFSSADDVMIECDDCLGGFHLKCLTPPLKEVPEGDWICGFCEAHKIGRDVSFPMPPEGKKLVRTLREKLLSSDLWAAHIESIWKEGDGTYYCSVRWYVIPEETAIGRQPHNLKRELYRTNDFADIEVKKMITSF 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00644 214 MobiDBLite consensus disorder prediction 1 37 - -
Accr10g00644 214 PANTHER PHD FINGER PROTEIN 50 125 - -
Accr10g00644 214 MobiDBLite consensus disorder prediction 9 23 - -
Accr10g00644 214 Pfam PHD-finger 78 123 IPR019787 -
Accr10g00644 214 ProSitePatterns Zinc finger PHD-type signature. 78 121 IPR019786 -
Accr10g00644 214 ProSiteProfiles Zinc finger PHD-type profile. 75 124 IPR019787 -
Accr10g00644 214 ProSiteProfiles BAH domain profile. 133 214 IPR001025 GO:0003682
Accr10g00644 214 SMART PHD_3 77 122 IPR001965 -
Accr10g00644 214 SUPERFAMILY FYVE/PHD zinc finger 64 125 IPR011011 -
Accr10g00644 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 134 IPR013083 -
Accr10g00644 214 Gene3D - 16 213 IPR043151 -
Accr10g00644 214 FunFam Origin recognition complex subunit 1 73 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00644 Accr-Chr10 14275050 14275808 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00644 39 211 Core DNA Replication Machinery Family AT4G12620 65.537 1.75e-74 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr10g00644 PHD 7.5e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00644 K02603 - gmx:100798547 311.227