Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00636 ATGGTGCCAGAAAACATGAAGAAACAACTTGCTTTGGCTGTGAGGAGCATCCAGTGGAGCTATGCCATATTCTGGTCTGCTTCTAGTAGCCAACCCAGGGTTTTGAAATGGGGTGAGGGATATTACAATGGCGACATAAAGACTAGGAAAACAAGTCAGGCAGCACAACGTAGTTCTGACCAAATAGGTTTGCAGAGGAGTGAGATGTTGAGAGAGCTATTTGAGTCCCTTACAACTGCAGAATTCGCCGCCACACAAATTAAAAGGCCTTCATCAAATGCGCTAAGCCCTGAAGACCTCACCGGTGCTGAGTGGTATTACTTGGTTTGCATGTCCTTTGTATTCAATATTGGCCAAGGATTACCTGGACGAACTCTGGCAAATGGCCAACCAATTTGGGTTTTCGATGCCCCTCATGCTGATGCTAGAGTTTTTAGTCGCTGTGTGCTCGCAAAGACTGTAGTATGCTTCCCTTTTCTGGAAGGTGTTGTTGAGCTGGGGACGAGTGATCTGATTTCAGAAGATCTCAGTCTCATTCAACGTATAAAAACTTCTTTCCTGGACATTCTGAATTCCAATGTGTCTATAGCATTTGGCCACAGTGCTTATGATGCCGAATTACCAAAAGGGGGATATGCTGTAAACAACAAAACTTTTGCCTATAGTTCAACTGCGATTGAAGCAAACTGGCCAGCAGATGAGACACATATGGTTGAAGGAATAAGTGGTGGTGCTTCTCAGGTCCAAAGCTGGCAAGTTATGGATGATGAATTGAGTAATGATGCCCATAACTCAATGACAACTAGTGACTGTAGTTCTCAAACTCTTGCTGATCCTGAAAAAAGTGCCTCTGTTCCCAAGGATCAAAACCCAACTGACCACTCTGTGCAAGACCTCCAAGAGTGGCATTATCGAAAAGTTCTTTCTGCAGTTCTAAAGGATTCAAACCCATTAGCTATTGGAGAGCATTTTCAAAGTAGTGATAAGGAATCCAGCTTTGTTAGTTGCAAGAAAAGAGGATCGATGAGTTGTCAAATGCTAACAGGAGGAGGAACCCCACAGAAGTTGTTAAAGAAGGTATTGTTCGAAGTTCCTCGGATGCATATGGACTTGCTTCTTGAAATCCAAGAAGAAAATGATTACAAAGAGAGAATGAGACCAGAGGTTGATGAAATTGGCATGAACCATGTGTTGTCAGAAAGAAGGAGAAGGGCGAAACTAAATGAAAGGATCTTAACCCTTAGATCAATGGTCCCTTCAGTTAGTAAGGATGACAAAGTTTCAATACTAGATGATGCAATCGAATACCTTAGGAAGCTTGAGAAGAAGGTTAGAGAACTGGAAGCATGTAGGGAGCTAATAGATTTAGAAACCAAAGCTGAAAGAACGCCTCAAGATATAGTAGAGAGGACTTCTGATAATTATTTTAACAAAACTGATAATGGCATGAAGTCAATGAATAACAAGAGAAAGGCATGTGAGATTGAAGAAGAGACATGGCTAGAGAATGATTCATTTGCTCTAAATGACAGTTCTACAAGTAGCGTGACCATCAGTTTGAGCAACACTGATGTTCTGATTGAGGTGAAATGTCCGTGGAGGGAAGGTATAGTGCTGAACGTTATGGAAGCACTTAAGAGTTTCCACGTGGATTTACGATCAATTCAGTCATTAGAAGCTGATGGGATTCTTCATCTAACCATTAGATCCCAGTTGAGAGTACCAACCATCACCTCAGCAAAAAAGATAAAACAAGCGCTGCAAAAAGTAATTTGGAACGGTTGA 1785 0.4179 MVPENMKKQLALAVRSIQWSYAIFWSASSSQPRVLKWGEGYYNGDIKTRKTSQAAQRSSDQIGLQRSEMLRELFESLTTAEFAATQIKRPSSNALSPEDLTGAEWYYLVCMSFVFNIGQGLPGRTLANGQPIWVFDAPHADARVFSRCVLAKTVVCFPFLEGVVELGTSDLISEDLSLIQRIKTSFLDILNSNVSIAFGHSAYDAELPKGGYAVNNKTFAYSSTAIEANWPADETHMVEGISGGASQVQSWQVMDDELSNDAHNSMTTSDCSSQTLADPEKSASVPKDQNPTDHSVQDLQEWHYRKVLSAVLKDSNPLAIGEHFQSSDKESSFVSCKKRGSMSCQMLTGGGTPQKLLKKVLFEVPRMHMDLLLEIQEENDYKERMRPEVDEIGMNHVLSERRRRAKLNERILTLRSMVPSVSKDDKVSILDDAIEYLRKLEKKVRELEACRELIDLETKAERTPQDIVERTSDNYFNKTDNGMKSMNNKRKACEIEEETWLENDSFALNDSSTSSVTISLSNTDVLIEVKCPWREGIVLNVMEALKSFHVDLRSIQSLEADGILHLTIRSQLRVPTITSAKKIKQALQKVIWNG 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00636 594 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 391 440 IPR011598 GO:0046983
Accr10g00636 594 Coils Coil 430 457 - -
Accr10g00636 594 SMART finulus 397 446 IPR011598 GO:0046983
Accr10g00636 594 MobiDBLite consensus disorder prediction 260 296 - -
Accr10g00636 594 PANTHER TRANSCRIPTION FACTOR TT8 2 592 - -
Accr10g00636 594 Pfam Helix-loop-helix DNA-binding domain 395 441 IPR011598 GO:0046983
Accr10g00636 594 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 186 IPR025610 -
Accr10g00636 594 Gene3D - 391 452 IPR036638 GO:0046983
Accr10g00636 594 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 394 454 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00636 Accr-Chr10 13600409 13603988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00636 2 592 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 44.204 7.31e-164 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr10g00636 bHLH-MYC_N 2.1e-44 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00636 - - ahf:112732736 693.73