Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00628 ATGGGGAAAGGTAGACCTAGGGCTGTGGAAAAAGGTATTGCAGGGCAGAGTCTTAGTGTTTCATCGTCCGGGTCACTGAATATACCGTCAGGGCCTGTATATTTTCCTACCGAAGATGAGTTCAAAGACCCCTTGGAATATATTTATAAGATTAGACCTGAAGCTGAGCCATATGGAATTTGTAAGATTGTACCACCAAAGAGTTGGAAGCCCCCATTTGCTTTGGATCTAGATTCTTTTACTTTCCCCACTAAAACACAGGAAATTCATAAGTTACAGGCTCGTCCTGCTGCGTGTGACTCCAAGACTTTTGAGTTGGAGTACTCTAGGTTTTTAGAGGATCACTGTGGTAAAAAGTCAAGGAAGAAAATTGTATTTGAAGGGGAAGAACTGGACTTGTGCGCACTGTTTAATGCTGTTAAGAGATTTGGTGGTTATGATAAGGTTGTGAAGGAAAAGAAATGGGGGGATGTTTTCCGGTTTGTAAGGCCAGGAAGAAAAATTACAGACTGTGCAAAGCATGTCCTATCACAGTTGTATTGTGACCATTTGTATGATTATGAGGATTACTATAATCAGCTGAATCAAGAGACAGGTAAGAAAGGCTTGCTTGAGGATGAAAAAAGTGATCATGGCATTCCATCTTCAGGATCCAAGATGATGAGAAGAAGTTTTGATTGTTTGAAAGTTAAGGATTGTAAAGTGCAGAAGGAAGAACATGACCAGATTTGTGAGCAATGCAGAAGTGGTTTGCATGGGGACGTGATGCTTTTGTGTGATAGGTGTGATAAGGGCTGGCATATATATTGTCTCTCTCCACCCTTGAAGCAAATTCCTCGAGGAAACTGGTATTGCTTTAATTGCTTGAATTCTGACAGGGACAGCTTCGGTTTTGTGCCTGGTAAGCAGTACACCTTGGAAACCTTTAGACGTGTGGCTGATCGGTCAAGGAAGAGATGGTTCGGGCCAGGACCTGTGTCAAGGGTGCAAATAGAGAAGAAATTTTGGGAGATTGTAGAGGGATTGGTTGGTGAGGTTGAGGTTATGTATGGAAGTGATTTAGATACATCTGTCTTTGGAAGTGGTTTTCCACGCTCAACTGATCAGAAACCAGAATCAATTGATTCAAAATTATGGGATGAATACTCATCTAACCCATGGAATCTTAACAATTTGCCTAAATTGAAAGGGTCGATGCTTCAAGCTGTTCATCATAATATCACAGGGGTGATGGTACCCTGGCTGTATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCATTGCTTTTACTCAATAAATTATCTACACTGGGGAGAGCCAAAATGCTGGTACAGTGTTCCTGGTAGTGAAGCCAGTGCTTTTGAGAAGGTGATGAGAAGCAGTCTTCCTGATCTTTTTGATGCGCAGCCAGATCTGCTATTCCAGCTTGTAACTATGTTAAACCCATCTGTTTTGCAAGAACATGGAGTTCCAGTCTACAGCATAATTCAGGAGCCTGGGAATTTTGTAATCACCTTTCCCAGATCATACCATGGAGGTTTTAATCTTGGTTTGAATTGTGCAGAGGCGGTTAATTTTGCCCCTGCTGACTGGCTACCTTATGGTGCATTTGGAGCTGATCTCTACCAGCGATATCACAAAGCTGCTGTCTTGTCTCATGAGGAGCTTCTTTGCGTAGTAGCCCAGTGCGGTGACATTGATACTAAAGCATCTCCTTATTTGAAGAAGGAATTGCTTCGAATATATGATAAAGAGAAATCTTGGAGAGAAAAACTCTGGAAAAATGGTATTGTCAAATCATCTCGCATGGCTCCTCGGCATTGTCCTCAATATGTGGGAACTGAAGAGGATCCATCATGCGTTATTTGCCAGCAGTATCTATATCTTTCTGCTGTTGTTTGCAGTTGCAGACCATCTTCTCTTGTATGCCTGGAGCACTGGAAACATCTTTGTGAGTGTAAAACTGCAAAACTGCGTCTTCTCTATCGTCACTCACTTGCAGAATTGTATGACTTGGCACTTTCTATGGACAATTATACTTCTGAGGAGAAAGCACTGGGTAGGAATATAAGAAAGAATTCTTCATGTCCGGGTACTTTGGCAAAAAATGTAAAAGGTGGTTCCATTACTTTCTCTCAGTTTGCTGTACAATGGCATCTGCGATCTAGTGAGATTCTTCGGAATCCTTATTCAAGTGATGCTTTTGTTTCTGCACTAAGGGAAGCTGAACAGTTTCTTTGGGCTGGTCCTGAGATGAATTCTGTTCGAGATATGGTGAAGAATTTGATTGAAGCTCAAAAGTGGGCTGAAGGGATAAGAGGTTGTTTAAGAAAAATTGAAGCCTGGTTGTGTGATCAGGACTCTAGCATGGAGAAAGTTCACTTAGAATTTGTTGATGAGCTGCTAAAATTTAATTCTGCACCATGCAATGAGCCTGCCTATCATAAGTTGAAGAAATATAAAGAAGGGGCCGTATTGTTAAGTCAGGAGATTAATATTGCTTTGTCAAAGTGTTCAAAGATGTCAGAGTTGGAATCTCTACATTCTAGAGCTTGTGCCTCTCCAATCTACGTGAAAGAAGTGAAGAATTTGGAAAGGAAACTTTCTTCTATTAAGGCATGGCTGCATAGAGCTAGAAGCTGCATCTCAATAAAACATCCTGCTGCAGTAGAGCTTGATGTTCTTTTCCAATTGAAGTCGGAGATTATGGAGCTGCAAGTACAACTTCCAGAGATAGAAGTAATTCAGGATATATTAATTCAAGCAGAATCTTGTAGTTCAAAATGCAGTGAGACATTACAAGGTCCCTTGACTCTAAAGAATGTCAGTTTGCTGCTTGAGGAATGGGACAGCTTTATGGTTGATGTACCAGAGGTGAAGCTCCTGAGGCAATATTATAAGGATGCTGTTTCATGGGTGTCCAACTTTAACCGTGCATTAGGGACGACACATGAATGGGACGATCAACATAATGTTGCTGATGAATTGAAGGCTATTTTAGAAGATGGTTTGTCTTTAAAAATCCAAGTTGATGAGTTGCCATTAGTTAAGACTGAGCTGCAGAAGGCTCTTTGCCGGGAAAAGGCTCAAAAGGCGCATAAATCTAAAATGTCTCTGGAATTTGTTCGAGAAGTGATGAAGGAGGCCACACTACTGCAAATTGAAGGAGAGAAATTATTTGTTAGTTTATCTGGTGTACTTGCTGTTGCCATGCCTTGGGAGGAAAGGGCTAAAGAGATTCTTTCGCATAAGGCTTCCTTCTCTGACTTTGAGGACATGATCAGGACCTCAGAATCCATTTTTATGATTCTTCCTTCCCTTAATGATGTGAAGGAAGCACTATTGGAAGCTAATTCTTGGTTAATGAATTCAAAACCATTCTTGGTTTCCTGTACTTGTCCATTAGATTCTCTACGTAAAGTTGAGGACCTTCAGAGGTTGGTTTCTCGGTCGAAGCTTGTTAAAATAACGTTTGAAGAAATAAAAATGCTTGAAATAGTTCTGCATAACTGCAAAGAATGGGAGGCTGAGGCATGTTCTGTATTGGAAGATGCCCAGCATATTTTTGAATTGGATAACATTGTTCATGGAATAAGCAGTAGCCTAATGGCCAAAGTTGAAGGTTTGATTGCCAGAATGCAGTCTACCGCAAGATCTGGTTTGTCACTTGGTTTTGAGTTTAAAGAGATTCCAAAACTTGAAGCAACATGTTCTACACTGCAGTGGTGCAAAAAGATTCTTTCCTTCTGCAATCTTTCTCCTTCTTTAGAGGATGTTTTGGAGGCTATGGAAGACTTTCCTCACTCGTGTCATTCTGGGGCCCTATTGAATCTACTGATTGGTGGACTCAAATGGCTTAGGAGAGCCTTGGAGGTATTCTCTGGACCACACAATTCTAGAAGAAGCAAGTCAATTGAAGTTGAAGATATTATTAGAGATTACCAGACCATTAATATTCCTTTTGCAGCAGTAATTTACCATCTTGAAGAAGCTATTGGAAAACATAGGTTGTGGCAAGAACAGGCATGTCAATTCCTTACTCTTTGTTCTGGGGAACGGTCTTGGTTGTCAATGTTGCAACTCAAGGAACTAGGCGATACTGTTGCTTTCGACTGCACCGAACTGGATTCTATTTTGTCTGAAGTTGAGAAGGTGGAGAATTGGAAGAAACACTGCATGGATTATGTAGGAAATTTAGTCCAAAATGAGAATTCACTGTTTCATGCTCTGCAGAAGATGAAACAGAGTCTTGATAGGTCACTGTCCATATATGGCAAGTTGAAAGACTTCAAGGAAGAATGTTTATGCATCTACTGCTTTACCGATTCGAAAGATCAGGAATTTCTTACTTGCTCTTCTTGTAGAAACTGCTATCATATACTGTGTATTGGACCATTGGTGGCCAATAGCCATGAAAATTATACGTGCCCTTTTTGTAAGATATTGAAGGGTGAATCCAATTATAAGAAGGGAACTCTCCTTATGAGGTCAGGGGAGAAGCGTGCTGAACTGAAAGTTCTTCTACAACTCCTCTTTGATGCTAAAAATTTGTGTGTAAGGATTGATGAGACAGATGCTCTCAACCAACTTGTCGAGCAAGCACTTCTATGCAAATCTTACTTGAGAGAAATAGTGAACTTCACATCAGCTAATGTAGACAATGATCTTGGTATCATCTCTGAAAGATTGACCATAGCTATAAAGGCCTGTGAGGTTGCTAGTGTCTGTGATCATCAAGATGTACATGACCTTGAGTTGGCATTAGGAAGACAACTTTGGAAAATTCAAGTCGATGGAATGCTAAATAGTTCACTAAATCCTTCTATCCAAGATGTTCAGAAGCATCTGAAAGAGGGACTGGCTATGGAAATATCACCTGAAGATCATTATATGCTGCCACTTGCAAAATTGAATTGCTTATACTTGCAGTGGGCAGAACTAACCAAGAAGGTTGCAGTTGATTCTGGGGCCCTCAGCATAGATAAAGTTTTTGAACTCATTGCAGAAGGTGAAAACTTGCCTATTAATGTGGATGAGGATCTCAGGATTTTAAGGGCTCGAAGTATGCTTTATTGCATTTGTCGGAAGCCCTTTGATCCTGGGAGTATGATTGCATGTAATCAGTGTGGTGAGTGGTATCACTTTGATTGCATGAAATTACCAGGGAGTCAAGAGTTCTACATTTGTCCTGCATGTAACCCCTCTACATCAGGATTGCCAACATCTCTGGTGGATCATGAGAGATTAAGTAGTGGTAAACTGGAGGAACCGAAAACACCATCTCCCAGGCATACGAATCCAAGAAAGAAACAGAAGAAAGATGAGGCAATATGTGGAAGTGAGGATCAAATTCAAGGCAATAATTTTAGGAAGGCGAGTGGGATAGGGTATGTTAGGTGGCAAAATCGAAAGCCTTTCAGAAGAGCAGCTAAGAAACGTGTTGACCTTCGGAGTCTTTCTTCATTTCTATGTATACACCAACAACATTAA 5502 0.4073 MGKGRPRAVEKGIAGQSLSVSSSGSLNIPSGPVYFPTEDEFKDPLEYIYKIRPEAEPYGICKIVPPKSWKPPFALDLDSFTFPTKTQEIHKLQARPAACDSKTFELEYSRFLEDHCGKKSRKKIVFEGEELDLCALFNAVKRFGGYDKVVKEKKWGDVFRFVRPGRKITDCAKHVLSQLYCDHLYDYEDYYNQLNQETGKKGLLEDEKSDHGIPSSGSKMMRRSFDCLKVKDCKVQKEEHDQICEQCRSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPRGNWYCFNCLNSDRDSFGFVPGKQYTLETFRRVADRSRKRWFGPGPVSRVQIEKKFWEIVEGLVGEVEVMYGSDLDTSVFGSGFPRSTDQKPESIDSKLWDEYSSNPWNLNNLPKLKGSMLQAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSINYLHWGEPKCWYSVPGSEASAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQEHGVPVYSIIQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKAAVLSHEELLCVVAQCGDIDTKASPYLKKELLRIYDKEKSWREKLWKNGIVKSSRMAPRHCPQYVGTEEDPSCVICQQYLYLSAVVCSCRPSSLVCLEHWKHLCECKTAKLRLLYRHSLAELYDLALSMDNYTSEEKALGRNIRKNSSCPGTLAKNVKGGSITFSQFAVQWHLRSSEILRNPYSSDAFVSALREAEQFLWAGPEMNSVRDMVKNLIEAQKWAEGIRGCLRKIEAWLCDQDSSMEKVHLEFVDELLKFNSAPCNEPAYHKLKKYKEGAVLLSQEINIALSKCSKMSELESLHSRACASPIYVKEVKNLERKLSSIKAWLHRARSCISIKHPAAVELDVLFQLKSEIMELQVQLPEIEVIQDILIQAESCSSKCSETLQGPLTLKNVSLLLEEWDSFMVDVPEVKLLRQYYKDAVSWVSNFNRALGTTHEWDDQHNVADELKAILEDGLSLKIQVDELPLVKTELQKALCREKAQKAHKSKMSLEFVREVMKEATLLQIEGEKLFVSLSGVLAVAMPWEERAKEILSHKASFSDFEDMIRTSESIFMILPSLNDVKEALLEANSWLMNSKPFLVSCTCPLDSLRKVEDLQRLVSRSKLVKITFEEIKMLEIVLHNCKEWEAEACSVLEDAQHIFELDNIVHGISSSLMAKVEGLIARMQSTARSGLSLGFEFKEIPKLEATCSTLQWCKKILSFCNLSPSLEDVLEAMEDFPHSCHSGALLNLLIGGLKWLRRALEVFSGPHNSRRSKSIEVEDIIRDYQTINIPFAAVIYHLEEAIGKHRLWQEQACQFLTLCSGERSWLSMLQLKELGDTVAFDCTELDSILSEVEKVENWKKHCMDYVGNLVQNENSLFHALQKMKQSLDRSLSIYGKLKDFKEECLCIYCFTDSKDQEFLTCSSCRNCYHILCIGPLVANSHENYTCPFCKILKGESNYKKGTLLMRSGEKRAELKVLLQLLFDAKNLCVRIDETDALNQLVEQALLCKSYLREIVNFTSANVDNDLGIISERLTIAIKACEVASVCDHQDVHDLELALGRQLWKIQVDGMLNSSLNPSIQDVQKHLKEGLAMEISPEDHYMLPLAKLNCLYLQWAELTKKVAVDSGALSIDKVFELIAEGENLPINVDEDLRILRARSMLYCICRKPFDPGSMIACNQCGEWYHFDCMKLPGSQEFYICPACNPSTSGLPTSLVDHERLSSGKLEEPKTPSPRHTNPRKKQKKDEAICGSEDQIQGNNFRKASGIGYVRWQNRKPFRRAAKKRVDLRSLSSFLCIHQQH 1833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00628 1833 PANTHER LYSINE-SPECIFIC DEMETHYLASE 27 1010 - -
Accr10g00628 1833 SUPERFAMILY Clavaminate synthase-like 361 562 - -
Accr10g00628 1833 ProSitePatterns Zinc finger PHD-type signature. 244 288 IPR019786 -
Accr10g00628 1833 SMART PHD_3 1695 1737 IPR001965 -
Accr10g00628 1833 SMART PHD_3 1439 1484 IPR001965 -
Accr10g00628 1833 SMART PHD_3 243 289 IPR001965 -
Accr10g00628 1833 ProSiteProfiles Zinc finger RING-type profile. 1440 1484 IPR001841 -
Accr10g00628 1833 ProSitePatterns Zinc finger PHD-type signature. 1696 1736 IPR019786 -
Accr10g00628 1833 FunFam Transcription factor jumonji (JmjC) domain-containing protein 18 121 - -
Accr10g00628 1833 MobiDBLite consensus disorder prediction 1 24 - -
Accr10g00628 1833 Pfam jmjN domain 32 65 IPR003349 -
Accr10g00628 1833 Pfam PLU-1-like protein 942 1148 IPR013637 -
Accr10g00628 1833 Pfam PLU-1-like protein 1142 1394 IPR013637 -
Accr10g00628 1833 SUPERFAMILY FYVE/PHD zinc finger 1692 1742 IPR011011 -
Accr10g00628 1833 CDD ARID 100 188 - -
Accr10g00628 1833 SUPERFAMILY FYVE/PHD zinc finger 1434 1485 IPR011011 -
Accr10g00628 1833 SMART JmjN_1 30 71 IPR003349 -
Accr10g00628 1833 SMART cupin_9 381 547 IPR003347 -
Accr10g00628 1833 Pfam C5HC2 zinc finger 624 675 IPR004198 -
Accr10g00628 1833 ProSiteProfiles JmjC domain profile. 381 547 IPR003347 -
Accr10g00628 1833 MobiDBLite consensus disorder prediction 1752 1781 - -
Accr10g00628 1833 Gene3D Cupin 261 553 - -
Accr10g00628 1833 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1682 1738 IPR013083 -
Accr10g00628 1833 SMART bright_3 99 193 IPR001606 GO:0003677
Accr10g00628 1833 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Accr10g00628 1833 FunFam Predicted protein 349 552 - -
Accr10g00628 1833 ProSiteProfiles Zinc finger PHD-type profile. 241 291 IPR019787 -
Accr10g00628 1833 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1426 1485 IPR013083 -
Accr10g00628 1833 SMART ARID_2 95 188 - -
Accr10g00628 1833 Pfam PHD-finger 243 290 IPR019787 -
Accr10g00628 1833 Pfam PHD-finger 1695 1738 IPR019787 -
Accr10g00628 1833 Pfam JmjC domain, hydroxylase 414 530 IPR003347 -
Accr10g00628 1833 CDD PHD_RSF1 244 288 - -
Accr10g00628 1833 SUPERFAMILY ARID-like 81 196 IPR036431 GO:0003677
Accr10g00628 1833 Pfam ARID/BRIGHT DNA binding domain 112 188 IPR001606 GO:0003677
Accr10g00628 1833 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Accr10g00628 1833 SUPERFAMILY FYVE/PHD zinc finger 237 291 IPR011011 -
Accr10g00628 1833 Gene3D Cupin 13 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00628 Accr-Chr10 13245824 13268095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00628 40 95 JUMONJI Transcription Factor Family AT4G20400 50.000 1.26e-09 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Accr10g00628 PLU-1 6.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00628 K11446 - gmx:100789512 2682.52