Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00587 ATGGTAGAGGTTAAAAGGGAGCCGGATGAGTTCTCTTTGGATTCACCTAAAGGAGATGGACTCCAGTTATGTTTTTCAACCCCTGTTTCACGGAGAAGAGGACGAGCTAGACGATCATCAAAGGGGTGTTGGACAGAGGAAGAGGACAGCCGTTTGATTGAGGCAGTCAAGAAGCAAAACGGAAGGAATTGGAAGAAAATAGCTGCTTATCTCCCAGGGAGAACTGATGTTCAATGCTTGCATCGTTGGCAAAAAGTTCTGAATCCTGAACTTGTCAAGGGATCGTGGACAAATGAGGAGGATGACTGTATAATTGAGCTAGTCACTAACTATGGCGTTAGGAAATGGTCCCTTATTGCAAAACACTTGCCTGGTCGCATAGGGAAGCAATGCCGAGAGAGGTGGCATAATCACTTGGACCCAGCTATAAAGAAAGATGCATGGACAGAGGAGGAGGAAGCCACGCTTGCTTTCTATCACCAAATATATGGTAGCAAGTGGACCGAAATTGCAAGGTTTCTCCCTGGAAGGCCTGACAATGCCATTAAAAATCATTGGAACTGTTCAATGAAGAAGAAGTTGGATGCATCCTCACCTGGATGTGGTGCAAATACCACCGCCTGTGGTTCCAACACTTGCAGAATCAATATGGGGGTTAAAGAAGACGATCAGAACCTCAGTCAAATGGTTTCTTCCAAAAGGAGCTGCAGATTGAAGAACAATATTGATTCCTCCTTGACAGAATTGATTGCTCCGAATACTTTTGATGGGATGTGTGTTGGAATCTCGCAAGATGAGAGCAGATTGATCTCCTCACCGGAAAGAGTTTTCAACCGACCCATGACTCCTATTGATGTTCCTCAAGTCAGGCTTGCTGCTGAACTAGATCGTGTTACTATTGAAGCTGACAGTATTGTCCCTAATGAGCTGTCTGAGTCTTGTTCTGATGCAACGTCTTTCGGGGATGGTGAGTGTTTCAGTCCTCTTTCGAGCTTCTCAGTATTGGCTAATTACAAGGAGGAAGATCAAGTTGAACCGAGAAATAAAAGAAACAGATCTCAAAGTCAAAACTTGTATCCTGCAAAGTTATCTCTGGTGGAAGATTTGGCTTCCCCCATAGAATTTATGAAAGAAAACCTCATCAACGGTTATTATTATCATACTCCTCCCAAGTCCACAGCAGCCAGTAGCCCTGAATCTATCCTGAGGAGCTTAGCTATGACCTATGACAATATTCCTTCCATCATTAGGAGGAGAGCTCACAGTAAAACAACTCCTGAGGCTGTATGTGTTGGTGTGAATGGATTACGCAATTTGAATTCGAAGCAGAGTGGTGCCATGTTGTTCATGTCTAAATCAACGACCTCTGCCAGATCTCTCTTCAAATGGCATTGA 1395 0.4401 MVEVKREPDEFSLDSPKGDGLQLCFSTPVSRRRGRARRSSKGCWTEEEDSRLIEAVKKQNGRNWKKIAAYLPGRTDVQCLHRWQKVLNPELVKGSWTNEEDDCIIELVTNYGVRKWSLIAKHLPGRIGKQCRERWHNHLDPAIKKDAWTEEEEATLAFYHQIYGSKWTEIARFLPGRPDNAIKNHWNCSMKKKLDASSPGCGANTTACGSNTCRINMGVKEDDQNLSQMVSSKRSCRLKNNIDSSLTELIAPNTFDGMCVGISQDESRLISSPERVFNRPMTPIDVPQVRLAAELDRVTIEADSIVPNELSESCSDATSFGDGECFSPLSSFSVLANYKEEDQVEPRNKRNRSQSQNLYPAKLSLVEDLASPIEFMKENLINGYYYHTPPKSTAASSPESILRSLAMTYDNIPSIIRRRAHSKTTPEAVCVGVNGLRNLNSKQSGAMLFMSKSTTSARSLFKWH 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00587 464 CDD SANT 95 139 IPR001005 -
Accr10g00587 464 Pfam Myb-like DNA-binding domain 145 187 IPR001005 -
Accr10g00587 464 Pfam Myb-like DNA-binding domain 93 139 IPR001005 -
Accr10g00587 464 Pfam Myb-like DNA-binding domain 41 87 IPR001005 -
Accr10g00587 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 143 IPR017930 -
Accr10g00587 464 PANTHER MYB PROTEIN-RELATED 41 112 - -
Accr10g00587 464 FunFam Transcriptional activator Myb isoform A 40 92 - -
Accr10g00587 464 ProSiteProfiles Myb-like domain profile. 140 190 IPR001005 -
Accr10g00587 464 SMART sant 40 89 IPR001005 -
Accr10g00587 464 SMART sant 92 141 IPR001005 -
Accr10g00587 464 SMART sant 144 192 IPR001005 -
Accr10g00587 464 FunFam Transcriptional activator Myb isoform A 93 145 - -
Accr10g00587 464 CDD SANT 44 87 IPR001005 -
Accr10g00587 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 87 IPR017930 -
Accr10g00587 464 Gene3D - 40 92 - -
Accr10g00587 464 ProSiteProfiles Myb-like domain profile. 88 139 IPR001005 -
Accr10g00587 464 CDD SANT 147 187 IPR001005 -
Accr10g00587 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 194 IPR017930 -
Accr10g00587 464 SUPERFAMILY Homeodomain-like 39 96 IPR009057 -
Accr10g00587 464 ProSiteProfiles Myb-like domain profile. 36 87 IPR001005 -
Accr10g00587 464 Gene3D - 93 144 - -
Accr10g00587 464 Gene3D - 146 207 - -
Accr10g00587 464 SUPERFAMILY Homeodomain-like 90 186 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00587 Accr-Chr10 11544973 11548488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00587 29 195 MYB Transcription Factor Family AT5G02320 67.665 1.28e-77 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr10g00587 Myb_DNA-binding 7.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00587 - - aprc:113869477 363.614