Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00579 ATGGCTTCGTCCAGGTCAATGGACCGTTCCTCTGACGACATCGTCGATTCAACGCCTTTTCTGGGGAATTCAGGTGGTTCTTCCGATGAATTCAATTCCAGCCGTCGATTTGTGCGGAGACAGAGCCTGCGACAAGCTGCACGGTTCCTCAGGCAGGCTAGTGGCCGTAGGATGATTCGCGAGCCATCAATGATGGTTAGAGAGACTGCAGCCGAGCAACTGGAAGAGAGACAAAGCGATTGGGCTTATTCTAAACCCGTTGTGATTCTTGATATTATTTGGAATTTTGCCTTTGTTATTGCGGCCGTTACTGTGCTGATTATGAGCAGAAATGAATCGCCAAGCGTGCCTTTGAGGTGGTGGATTGTGGGTTATGCTATCCAATGCGTCCTTCACGTATTCTGTGTCTGCCATGAGTATAGGAGGCGGAGGCAGAGGCGGAACCAACAGAGTCAATCCCCGCCATCCTTGAACTCAGTGCCAAGGTCTGGAAGCAGTGACAATTCGAGTTCCGGTTCAAGGGAGAATTCTAGGCATTATGAAAGTTTGCCGCAATTTCATGAGGAGGGTACAAGTAGCACTGCAAAGCATCTGGAATCAGCCAATACAATGTTTTCATTTGTTTGGTGGATCATTGGATTTTACTGGGTGTCCTCTGGTACTGAAGCTTTAGCCAATGATTCTCCTCAGCTTTACTGGCTATGCATTCTTTACCTGGCTTTTGATGTTTTCTTTGTCATTTTCTGCATTGCACTGGCATGCATTATTGGCATTGCTGTTTGCTGTTGTCTTCCGTGTATCATTGCTCTTCTTTATGCAGTTGCAGACCAGGAAGGGGCAACAAAACAAGACCTCGAGCAGTTGTCAAAATTCAAATTCCGTAGAATAGACAATGAGAAAGTTGCCAGTAGCACAGAAGGACCTGTGGGAGGTGTGATGACTGAATGTGGATCTGATTTACCCACTGAACGTGTTCTTTCTGAGGAGGATGCGGAATGTTGCATCTGCCTTTCTGCTTATGAGGATGGGGTCGAACTAAGAGAACTACCTTGTGCTCACCATTTTCATTGTGCCTGCGTTGACAAGTGGCTGTACATAAACGCAACTTGCCCGCTTTGCAAGTATAATGTTTTGAAGGGTAGCTGCTATGGTCAAGAGGAAATTTAG 1167 0.4653 MASSRSMDRSSDDIVDSTPFLGNSGGSSDEFNSSRRFVRRQSLRQAARFLRQASGRRMIREPSMMVRETAAEQLEERQSDWAYSKPVVILDIIWNFAFVIAAVTVLIMSRNESPSVPLRWWIVGYAIQCVLHVFCVCHEYRRRRQRRNQQSQSPPSLNSVPRSGSSDNSSSGSRENSRHYESLPQFHEEGTSSTAKHLESANTMFSFVWWIIGFYWVSSGTEALANDSPQLYWLCILYLAFDVFFVIFCIALACIIGIAVCCCLPCIIALLYAVADQEGATKQDLEQLSKFKFRRIDNEKVASSTEGPVGGVMTECGSDLPTERVLSEEDAECCICLSAYEDGVELRELPCAHHFHCACVDKWLYINATCPLCKYNVLKGSCYGQEEI 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00579 388 CDD RING-H2_RNF6-like 332 374 - -
Accr10g00579 388 MobiDBLite consensus disorder prediction 146 187 - -
Accr10g00579 388 MobiDBLite consensus disorder prediction 1 33 - -
Accr10g00579 388 SUPERFAMILY RING/U-box 323 378 - -
Accr10g00579 388 FunFam E3 ubiquitin-protein ligase At1g12760 319 383 - -
Accr10g00579 388 Pfam Ring finger domain 332 374 IPR001841 -
Accr10g00579 388 MobiDBLite consensus disorder prediction 149 179 - -
Accr10g00579 388 ProSiteProfiles Zinc finger RING-type profile. 333 374 IPR001841 -
Accr10g00579 388 PANTHER TARGET OF ERK KINASE MPK-1 54 378 - -
Accr10g00579 388 MobiDBLite consensus disorder prediction 16 32 - -
Accr10g00579 388 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 318 381 IPR013083 -
Accr10g00579 388 SMART ring_2 333 373 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00579 Accr-Chr10 10990645 11002175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00579 23 381 C3H Transcription Factor Family AT1G68070 49.582 4.28e-119 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00579 - - qsa:O6P43_034207 583.563