Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00569 ATGGACTATCTCAGAAAAGACCAATTTGACAATCTTTCTTCTACTTCTTCTTTGTCTTCGTCGGAGGTGAGCTCGTCTAGCGAAGAGCCGACACTGTTACTGGCATCGAAGCGGCCCAAGAAGCGAGCGGGACGGAGGGTTTTCAAGGAGACTAGGCATCCCGTTTTCAGAGGAGTACGACGGAGGAACAACGACAAGTGGGTTTGCGAGGTTCGTGTGCCGAACAGTAACACCAGGATTTGGCTCGGAACATATTCCAAGGCCGAGATGGCCGCTCGTGCTCATGACGTGGCGGCACTGGCTCTTCGTGGCAAATCGGCTTGCCTGAATTTCGCTGACTCCACTTGGCGTTTGCCTGTACCGGAGTCAACCAATGCGGCGGAGATCAGGCGGGTGGCAGCTCTGGCTGCTGAGGAATTCGGCCGGAGCACGGATGATTCTGAGGTTTGCAGTAGCAGTAGTACAACGGTCAACGATGACGTCATCGGAGATGTGTCGAATGTACAGGACTACTGTGAGGAAGAAGCGACGTATATTAATCAAACCCCGACGGCGTCAACGACGGAGTTTGATCACGAGCTCCGTCATTGGCTAGTGAGTATGGCGGAGGAGCCCCTCCGATCGCCAGCCTCAGTTAGACCATATGGCTGGAGCTGGGATGACGTGGAGGTTGATCCTCTCGTCTCACTTTGGCAGTATTGA 702 0.5399 MDYLRKDQFDNLSSTSSLSSSEVSSSSEEPTLLLASKRPKKRAGRRVFKETRHPVFRGVRRRNNDKWVCEVRVPNSNTRIWLGTYSKAEMAARAHDVAALALRGKSACLNFADSTWRLPVPESTNAAEIRRVAALAAEEFGRSTDDSEVCSSSSTTVNDDVIGDVSNVQDYCEEEATYINQTPTASTTEFDHELRHWLVSMAEEPLRSPASVRPYGWSWDDVEVDPLVSLWQY 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00569 233 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Accr10g00569 233 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Accr10g00569 233 MobiDBLite consensus disorder prediction 8 32 - -
Accr10g00569 233 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 12 233 IPR045277 GO:0003700
Accr10g00569 233 SUPERFAMILY DNA-binding domain 55 114 IPR016177 GO:0003677
Accr10g00569 233 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Accr10g00569 233 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Accr10g00569 233 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Accr10g00569 233 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Accr10g00569 233 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Accr10g00569 233 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00569 Accr-Chr10 10444749 10445450 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00569 32 140 AP2-EREBP Transcription Factor Family AT1G12610 77.064 5.57e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr10g00569 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00569 - - pcin:129312011 249.595