Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00561 ATGGCATCGTATAGGGAGTATGAGAAGGATCACGACGGCGATGGTGGAGCATCGGAGCTCAGCGACGTGGCCAGTGAGCCAGAACAAGACCCTGCAACTACGACCACTACCTATGAGGTTACGAGTAGTACGACGGCGTTTCAATTGTTGCCGTTGAAGGACGAGCCAGATGATTCGGACTCTGACCGGAAGAGTGAGGCGCCACCTCGAGTTGGGGCTGATCAGGTGGCGATGCAAATGCATATGCCAATGCACTTGCCGGCGCCGACAACTCAACGGTCATCCACCAAGGACCGCCACACCAAGGTGGAAGGTCGGGGACGGAGGATCCGAATACCTGCCACGTGTGCGGCTCGGATCTTTCAGCTCACTCGGGAGTTAGGCCACAAGTCTGACGGCGAAACTGTGCGGTGGCTTCTCGAACACGCTGAGCAGGCTATCATCGAGGCCACCGGCACCGGCACAGTCCCAGCCATCGCCGTCTCTGTCGGCGGATCTCTTAAAATTCCCACGACGTCCAACAATTCCGATGACGAAGCCAACAAGAAGCGGAGACGACCATCAAATAGCGAGTTCGTTGACGTAAATGGCACCATTTCGCAATCTTATGGGTTGGCGCCGATTCAACCTGCGGTTCCTCAAGGTCTTGTGCCGGTGTGGGCAGTAGGAAACACTAGTATGGTGGTTCCAGCAAACGCCTTCTGGATGATCCCTCCGGCGGCGGCGGCGCCATTGGCAACCGGAGTGACTGTATTGCCCAATCAACAACCTCAGGTATGGGCTTTCTCTCCAGCAGCAAATCCCATATTCAACATACCGGCGAGACCCATGGAAGTAACAACAAGCATCCTCACCGGTGTAGAAGCTTCCGGCAACAGGTCTAACTCAGGGGTGAGCACTATCACGGCAGGGCCGAAGGTGGCGCAGAGTTCAACCATGGCACCCAGCGTGAGCTCAAGTGGGAGTGTTAGCGGCAGCAAGGCACTGAGGGATTTTTCTTCGGAGATTTACAATAAGCAAGAGCTACAATTAATGGGGCGGCCATCAGAGGAAGAAGTTTCGAAACAATGA 1071 0.5528 MASYREYEKDHDGDGGASELSDVASEPEQDPATTTTTYEVTSSTTAFQLLPLKDEPDDSDSDRKSEAPPRVGADQVAMQMHMPMHLPAPTTQRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVSVGGSLKIPTTSNNSDDEANKKRRRPSNSEFVDVNGTISQSYGLAPIQPAVPQGLVPVWAVGNTSMVVPANAFWMIPPAAAAPLATGVTVLPNQQPQVWAFSPAANPIFNIPARPMEVTTSILTGVEASGNRSNSGVSTITAGPKVAQSSTMAPSVSSSGSVSGSKALRDFSSEIYNKQELQLMGRPSEEEVSKQ 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00561 356 Pfam TCP family transcription factor 95 174 IPR017887 -
Accr10g00561 356 ProSiteProfiles TCP domain profile. 96 150 IPR017887 -
Accr10g00561 356 MobiDBLite consensus disorder prediction 53 69 - -
Accr10g00561 356 MobiDBLite consensus disorder prediction 167 189 - -
Accr10g00561 356 MobiDBLite consensus disorder prediction 1 17 - -
Accr10g00561 356 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 32 343 IPR005333 GO:0003700
Accr10g00561 356 MobiDBLite consensus disorder prediction 289 326 - -
Accr10g00561 356 MobiDBLite consensus disorder prediction 1 71 - -
Accr10g00561 356 MobiDBLite consensus disorder prediction 27 49 - -
Accr10g00561 356 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00561 Accr-Chr10 10226623 10227693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00561 89 345 TCP Transcription Factor Family AT2G45680 49.147 1.92e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Accr10g00561 TCP 2.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00561 - - pcin:129284605 383.645