Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00556 ATGAAGCCTTCACATTTGTGCAGAGGATTTGGGCTGGGTCTTCCTAAACGTTTCTGTAAGGAGCATTTGCCCAAGGCTGATACTATGATTGTTTTGGAAGATGAGAATGGAAGAGAATATGAAATAAAGTATCTTGCTGAAAGATTGTGCTTGAGTAGTGGTGGATGGAAAAATTTTTCAAAGAAACACAACTTAATTGTGGGGGACGTTTTAATTTTCCATTTAATCCAACCTTCCAAGTTCAAGGTGTACATAAAATCTCATGGGTCAAACAAAATGGATGCTGCTCATCGTGTAGATGGTTCCTTAAATCAACTTGATTCGGGTGTCGTTCCTCGAGAAAATGATCTGAACAATAACGGAATAATCTGTGATGCTAACATGCCAGCATCAGATCAACCTGAAAATAGGGGCGATCCAGAAGAACATCTTGGCCTTGAAGTTTTGAACGAAAATAGATTGGAAAGATCTACAACCACTTTCCAAGAAGTTACAGGCATGGACAATTTCACGATAGTGGCCAATGGCTTGGTACCTGATGACTCCCAACTACCCCAACACATCAAAACCAAATACTATGAATTATGTTGCAGCCAGAAAATGTTTCTTCACGAGCATCTTCTTGGAGGCCAAAATCATCAGCTAGTCTTTGGGATGATATATGAGCTCATTAACATTGCTCATGCGATTAAAGCCAGCAAGATCACTACCCCTACAAATAGTTTTGACGTGTGGCATAGAAAGCTGAAAGGGCTTGAAATGTGGGGCATGAACGTTAATTTCTTGCTTACCAGGCTAGAACAACTTAGGAGTTTAGCTTCAAAAACTGAGGAGTATAAAGAGGCAAGAAATAATCGAGAACAAGCTGAAGAGCAAAAGAAAGACCTTGAACTAAAGCTTGAGATAGTCAAAGAGAACATAGAAAGACTTGATGGTCAGATTGACTCCAAAAATCTAAACCTTCAGACGTTGGGGGCTGAGTTTCAAGGGCTGGCTAATGCTTCTTGGTGA 1011 0.4016 MKPSHLCRGFGLGLPKRFCKEHLPKADTMIVLEDENGREYEIKYLAERLCLSSGGWKNFSKKHNLIVGDVLIFHLIQPSKFKVYIKSHGSNKMDAAHRVDGSLNQLDSGVVPRENDLNNNGIICDANMPASDQPENRGDPEEHLGLEVLNENRLERSTTTFQEVTGMDNFTIVANGLVPDDSQLPQHIKTKYYELCCSQKMFLHEHLLGGQNHQLVFGMIYELINIAHAIKASKITTPTNSFDVWHRKLKGLEMWGMNVNFLLTRLEQLRSLASKTEEYKEARNNREQAEEQKKDLELKLEIVKENIERLDGQIDSKNLNLQTLGAEFQGLANASW 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00556 336 CDD B3_DNA 1 85 IPR003340 GO:0003677
Accr10g00556 336 SMART B3_2 1 89 IPR003340 GO:0003677
Accr10g00556 336 ProSiteProfiles B3 DNA-binding domain profile. 1 89 IPR003340 GO:0003677
Accr10g00556 336 Pfam B3 DNA binding domain 1 86 IPR003340 GO:0003677
Accr10g00556 336 SUPERFAMILY DNA-binding pseudobarrel domain 1 85 IPR015300 -
Accr10g00556 336 Gene3D - 1 88 IPR015300 -
Accr10g00556 336 Coils Coil 272 320 - -
Accr10g00556 336 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 1 88 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00556 Accr-Chr10 10143972 10145552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00556 1 90 B3 DNA Binding Superfamily AT5G42700 52.222 2.34e-22 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr10g00556 B3 2.7e-15 CL0405