Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00554 ATGGTGAGGGGGAAAACTCAGATGAAGCGAATCGAGAACGATACGAGCAGGCAAGTAACTTTCTCGAAGAGAAGGAATGGGCTGTTGAAGAAGGCGTTCGAGCTTTCTGTACTGTGTGATGCAGAAGTTGCCCTCATAATTTTCTCGCCCAGAGGAAAGCTCTATGAGTTTTCCAGTTCTAGATGCTACAGTATAAACAAAACAGTTGAACGCTATCAAAAGAAAGTCAAGGACCTGGGTCTCTGCTCCAGAGGAATCCAAGATAACACACAGAATGGTAAGGATGGAACCATCAGCATACAAAAGAAGCTTGAGCATCTTGACATTTCTAAAAGGAAGCTTTTGGGAGATTGTTTGGATGCATGTTCCATTGAGGAGTTAAATCAGATGGAGAACCAGCTGGAACGAAGCTTAACCAAAATTAGGGCACGAAAGAATCAATTGTTCAAGGAGGAGATTGAGCAACTAAGGGAAGAGGAAAAATGCCTTCTGGAAGAAAATAACAAGTTACGAGAGCAGTGTGGGATTGATGAGCGAGGGTCAACCAGGAAGGAGGATGAGAACGAGGTGGTGACGGAGTTGTCCATAGGGCCACCGGAGGGACGAATCACTTAA 615 0.4472 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSRCYSINKTVERYQKKVKDLGLCSRGIQDNTQNGKDGTISIQKKLEHLDISKRKLLGDCLDACSIEELNQMENQLERSLTKIRARKNQLFKEEIEQLREEEKCLLEENNKLREQCGIDERGSTRKEDENEVVTELSIGPPEGRIT 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00554 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 158 - -
Accr10g00554 204 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Accr10g00554 204 FunFam Agamous-like MADS-box protein AGL13 13 82 - -
Accr10g00554 204 Pfam K-box region 89 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr10g00554 204 Coils Coil 124 173 - -
Accr10g00554 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Accr10g00554 204 MobiDBLite consensus disorder prediction 177 191 - -
Accr10g00554 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Accr10g00554 204 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Accr10g00554 204 MobiDBLite consensus disorder prediction 177 204 - -
Accr10g00554 204 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Accr10g00554 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Accr10g00554 204 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Accr10g00554 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Accr10g00554 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr10g00554 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr10g00554 204 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00554 Accr-Chr10 9963905 9972139 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00554 1 202 MADS-box Gene Family AT4G22950 59.813 1.82e-78 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Accr10g00554 K-box 6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00554 - - gmx:100782713 265.003