Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00548 ATGGCTTCCATTCTTCCCTTCCGTAGCTTCTTGTTACTTTCATGGATCCTCACAGTCATTGGAAGCCCAGCCGCTGCCGACGGAGTGTTCCAACCGAAACCGTGGGCTCTTGCTCACGCCACTTTTTATGGCGACGAGACAGCTTCTGCCACAATGGGAGGAGCATGTGGGTACGGAAACTTGTTCATGAACGGATACGGCACAGACACAGTAGCACTAAGCTCCACACTCTTCAATAATGGCTTCGCTTGCGGCACATGTTACCAAATCAAGTGCTACCAATCAAGCGCCTGTCACAAAGACGTCATGCTCACCACCGTGACGGCCACCAACCTCTGCCCACCAAACTGGGCCGAACCCTCCGACGACGGCGGCTGGTGCAACCCACCACGCGTACATTTTGACATGTCAAAGCCAGCATTCATGAAAATAGCCGACTGGAACGCCGGCATCGTGCCAGTAGTGTACCGGCGAGTGCCGTGCCAGAGGAATGGTGGGCTGAGATTCGCGTTCCAAGGGAACGGCTATTGGCTGCTTGTGTATGTGATGAATGTCGGTGGAGGAGGCGACATAGGAAACATGTGGGTGAAAGGAAGCAGAACGGGATGGATTAGTATGAGCCATAATTGGGGAGCTTCGTATCAAGCTTTTGCGACGTTAGATGGACAAGATTTGTCGTTTAAGATAACGTCGTACACCACAAAACAGACTGTTATTGCTTGGAATGTTGCTCCTTCTGGTTGGTCTGTTGGTCTTACTTATTCCTCCAACGTTAACTTTCACTGA 786 0.5127 MASILPFRSFLLLSWILTVIGSPAAADGVFQPKPWALAHATFYGDETASATMGGACGYGNLFMNGYGTDTVALSSTLFNNGFACGTCYQIKCYQSSACHKDVMLTTVTATNLCPPNWAEPSDDGGWCNPPRVHFDMSKPAFMKIADWNAGIVPVVYRRVPCQRNGGLRFAFQGNGYWLLVYVMNVGGGGDIGNMWVKGSRTGWISMSHNWGASYQAFATLDGQDLSFKITSYTTKQTVIAWNVAPSGWSVGLTYSSNVNFH 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00548 261 SUPERFAMILY Barwin-like endoglucanases 34 184 IPR036908 -
Accr10g00548 261 SMART dpbb_1 70 156 IPR007112 -
Accr10g00548 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 256 IPR007117 -
Accr10g00548 261 SUPERFAMILY PHL pollen allergen 163 256 IPR036749 -
Accr10g00548 261 Gene3D - 20 162 IPR036908 -
Accr10g00548 261 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Accr10g00548 261 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Accr10g00548 261 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Accr10g00548 261 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Accr10g00548 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664
Accr10g00548 261 PRINTS Expansin signature 65 79 IPR002963 GO:0009664
Accr10g00548 261 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Accr10g00548 261 Gene3D - 166 261 IPR036749 -
Accr10g00548 261 Pfam Lytic transglycolase 70 156 IPR009009 -
Accr10g00548 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 53 166 IPR007112 -
Accr10g00548 261 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Accr10g00548 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Accr10g00548 261 PRINTS Expansin/Lol pI family signature 34 49 IPR007118 GO:0005576
Accr10g00548 261 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Accr10g00548 261 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Accr10g00548 261 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Accr10g00548 261 PANTHER EXPANSIN-A15 28 256 IPR002963 GO:0009664
Accr10g00548 261 Pfam Expansin C-terminal domain 168 245 IPR007117 -
Accr10g00548 261 CDD DPBB_EXPA_N 34 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00548 Accr-Chr10 9851811 9853114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00548 1 261 Expansin Gene Family AT1G12560 63.602 2.73e-123 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00548 - - gmx:100807807 461.07