Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00484 ATGAATACATTTTCACATGTTCCTCCGGGGTTTCGATTCCATCCCACAGACGAAGAACTCGTTGATTACTACCTCAGAAAGAAGATAGCTTCCAAAAGGATTGATCTTGATGTCATCAAAGACGTTGATCTCTACAAAATAGAGCCATGGGATCTTCAAGAACTGTGCAGAATAGGGAGCGAGGAACAAAATGAGTGGTACTTCTTCAGCCATAAGGATAAAAAGTATCCAACAGGAACTCGGACGAATAGAGCGACAAAAGCAGGATTCTGGAAGGCAACGGGGAGAGATAAAGCGATATATTCGAGGCTTAGTCTGATTGGTATGAGGAAGACTCTTGTGTTCTACAAAGGAAGAGCTCCTAATGGCCAGAAATCTGACTGGATCATGCATGAGTATCGCCTTGAAACTCATGAAAATGCAACTCCTCAGGAAGAAGGGTGGGTTGTGTGCAGGGTGTTCAAGAAGAGAATGACGACAATGAGAAAAGTTGGAGAATATGAGTCACCATGTTGGTACGACGAAGCTGCCTCTTTCATGCAAGACCTTGATCCATCTCCAAGGCGTAATCATATTTCGCCACCTTACTATGCATGCAAGCAAGAGTTTGAATTCAATTACAACAACATCAACAATCTCTCTCATGATGCTTTCCTCCAACTTCCTCAGCTTGAAAGCCCTAATAAACTCCCCGCCTCGACCATCTTCACTAATGGCACCACCTTCGGTCGCAACAGAAACACCACAACCGCCACTACGACGTCGTTTTATGATCAACCAGTTGTTGTGGATGATGATCAAATGCTTACTGATTGGAGGGTGTTTGATAAATTTGTTGCTTCTCAGCTGAGTCAAGATCATCATCACCAACAACATGCTTCATCCAACGAAACCAATGCTGACGTTGTTGCTGCTAATGTCAATACTGAACAAGTTACTATGATGGAAAATCAGTCGTCGGAGTTGGAGCAGGAATATGCGTCAGCGTCCATCACCACCACCTGCAATATCGAACTATGGAAGTGA 1026 0.4376 MNTFSHVPPGFRFHPTDEELVDYYLRKKIASKRIDLDVIKDVDLYKIEPWDLQELCRIGSEEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSRLSLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETHENATPQEEGWVVCRVFKKRMTTMRKVGEYESPCWYDEAASFMQDLDPSPRRNHISPPYYACKQEFEFNYNNINNLSHDAFLQLPQLESPNKLPASTIFTNGTTFGRNRNTTTATTTSFYDQPVVVDDDQMLTDWRVFDKFVASQLSQDHHHQQHASSNETNADVVAANVNTEQVTMMENQSSELEQEYASASITTTCNIELWK 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00484 341 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Accr10g00484 341 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Accr10g00484 341 FunFam NAC domain-containing protein 16 160 - -
Accr10g00484 341 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 304 - -
Accr10g00484 341 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Accr10g00484 341 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00484 Accr-Chr10 8214553 8216507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00484 1 339 NAC Transcription Factor Family AT1G62700 54.523 8.53e-135 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr10g00484 NAM 7.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00484 - - tcc:18606319 441.425