Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00482 ATGTCATCCTCTTCTAATACTACAACTGCTGCGTTTACCTATTCTCAGCTGGACCACTTGCCTCCTTCCTCCGACCAGCTTTGTTATGTCCACTGCAACCTTTGTGACACTGTCCTCGCTGTGAGTGTTCCTTGCACGAGCTTGTTCAAGACAGTGACTGTGCGATGCGGCCATTGCACCAACCTTCTTCCTGTGATTGTCAACATGAGAGGCTTGCTTCTTCCATCTCCAAATCATCATCCATTTCACCTCTCTAACTCTTTCTCCTCTCCCCCTCCTCCTCCCCCTCTTAACCTCCTGGATCAGGAGATGCCAAACTCGTCAAATCACTACTTCTCTGCGCCTCCCACTACTCCTAATAGGGTTGCAGCAGCTAACGAGCTTCCACGCCCACCCCTCATCAATAGACCAGCCCCTGGGAAGAGGCAGAGAGTTCCATCTGCTTATAATCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGCAAATCCAGATATATCCCACAGGGAAGCCTTTAGCGCAGCTGCCAAGAATTGGGCCCACTTCCCTCACATACACTATGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAATGTGTGCCAGCAGGAAGGAAACGACGACGTTGGCATCATCAAAGATAATAATGGCCTTTTCTCTTCTGCTAATCTTGGTGTTTCTCCTTATTAA 693 0.4892 MSSSSNTTTAAFTYSQLDHLPPSSDQLCYVHCNLCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVIVNMRGLLLPSPNHHPFHLSNSFSSPPPPPPLNLLDQEMPNSSNHYFSAPPTTPNRVAAANELPRPPLINRPAPGKRQRVPSAYNRFIKDEIQRIKSANPDISHREAFSAAAKNWAHFPHIHYGLMPDQTVKKTNVCQQEGNDDVGIIKDNNGLFSSANLGVSPY 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00482 230 PANTHER PROTEIN YABBY 6-RELATED 1 200 IPR006780 GO:0007275
Accr10g00482 230 CDD HMG-box_SF 144 180 - -
Accr10g00482 230 Gene3D High mobility group box domain 134 186 IPR036910 -
Accr10g00482 230 Pfam YABBY protein 23 190 IPR006780 GO:0007275
Accr10g00482 230 SUPERFAMILY HMG-box 136 184 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00482 Accr-Chr10 8171883 8174336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00482 34 228 C2C2-YABBY Transcription Factor Family AT4G00180 53.521 1.19e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Accr10g00482 YABBY 2.8e-65 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00482 K25796 - gmx:100798441 284.263