Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00424 ATGGAGGGGAAGCACAAATGCAAGCTCTGTTCCAGAACCTTTGCTCATGGCAGATCACTCGGCGGCCACATGAAGGCCCATTTCGCCACCCTCCCTCTTCCACCCAAGCCTCAACCACCACCAGCACCACCATTGCCGCCGTCACCTTCATTCTCATCTTCTTCCTCACAAGATTCCGACGAGAAAGCTTTGATTTATACTCTCAGGGAAAATCCCAAGAAAAGTTTTAGGCTTGCAGATCCTGAATTCTCCGTCGTTGATACCACCGGCTCTGGTATTGTTCAGGACCGAGAAAGCGAGACCGAGTCAAAGAACCCAACTCGCCTTCGATCCAAGCGAGCCAGAACTCAGAGATTAACACCACCCAAGAGACCTAAACCAAGTGTCTCCGAGTCACCACCGGCGAGCTCTGTTTCTGAAACCAGCACTGAAGAAGATGTTGCTATGTGTCTCATTATGCTCTCCAGAGACAAATGGAAGAGAATCGCCGTAAAGAAAGAAGCAGAAGACGAAGAAGATCGTGGAGGATACGAGAAATTGAAGCTATTCGAGGAGATCAAGGTGAAGAAAGGAGTTCGCGGGAAGCATCAGTGTGAGAAATGCAGAAAAACGTTTCGATCGTTTCGAGCATTAGGGAGTCATAGAAACGTTTGTTTTCGCGACGAAGAAGAAGCTAGAAACGCCGGCAATAACAACACCAATCCGATTTTCGAATGCCCGTTTTGTTACAAGGTGTTCGGGTCAGGTCAAGCACTTGGTGGGCACAAGAGATCGCATTTGGTTCCATCTTCACCATCAACCTTGAACCATTCTGCAACATTAATAATCAAAGAAAGCTTCATCGATCTCAACTTGCCAGCTCCATTAGCAGCTGCAGCAGAAGATGAACTCAGTGTGGTTTCTGATGCATAA 912 0.477 MEGKHKCKLCSRTFAHGRSLGGHMKAHFATLPLPPKPQPPPAPPLPPSPSFSSSSSQDSDEKALIYTLRENPKKSFRLADPEFSVVDTTGSGIVQDRESETESKNPTRLRSKRARTQRLTPPKRPKPSVSESPPASSVSETSTEEDVAMCLIMLSRDKWKRIAVKKEAEDEEDRGGYEKLKLFEEIKVKKGVRGKHQCEKCRKTFRSFRALGSHRNVCFRDEEEARNAGNNNTNPIFECPFCYKVFGSGQALGGHKRSHLVPSSPSTLNHSATLIIKESFIDLNLPAPLAAAAEDELSVVSDA 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00424 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Accr10g00424 303 MobiDBLite consensus disorder prediction 32 50 - -
Accr10g00424 303 MobiDBLite consensus disorder prediction 28 71 - -
Accr10g00424 303 ProSitePatterns Zinc finger C2H2 type domain signature. 239 259 IPR013087 -
Accr10g00424 303 MobiDBLite consensus disorder prediction 87 143 - -
Accr10g00424 303 Pfam C2H2-type zinc finger 237 259 - -
Accr10g00424 303 Pfam C2H2-type zinc finger 196 215 - -
Accr10g00424 303 Pfam C2H2-type zinc finger 5 27 - -
Accr10g00424 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 259 IPR013087 -
Accr10g00424 303 SUPERFAMILY beta-beta-alpha zinc fingers 3 30 IPR036236 -
Accr10g00424 303 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Accr10g00424 303 SMART c2h2final6 196 216 IPR013087 -
Accr10g00424 303 SMART c2h2final6 237 259 IPR013087 -
Accr10g00424 303 SMART c2h2final6 5 27 IPR013087 -
Accr10g00424 303 SUPERFAMILY beta-beta-alpha zinc fingers 196 259 IPR036236 -
Accr10g00424 303 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 303 IPR044303 GO:0006355
Accr10g00424 303 Gene3D Classic Zinc Finger 193 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00424 Accr-Chr10 7061713 7062624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00424 5 300 C2H2 Transcription Factor Family AT3G60580 36.615 5.59e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr10g00424 zf-C2H2_6 1.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00424 - - qsa:O6P43_034089 279.641