Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00407 ATGTCCACTGGAAGACGCAGCTTGAAGCGCAATCGCAGACAAAAATTCGTGGAAGAAGGAGCAGTTCATCCGACGACCGATCGTAAAGTGTTGGCCCTTGAACCTCAACAGTCTCTTCAAGATCTCTTGAGTGAAGTTGTGGCGCAAGTCACTATTCTCAACTCCAGTTTATCATCGTCCCAGTCGGATCGCCTCGCGGCCATGCACGCTAATCATCTTCTCTTTGAACTCGCCAAGAATAAGTTAATTGTGGACACTATAGTGGAGTGCGGAGCCGTTCCTTCTTTGTTAAAACATCTGAAAGTTCCAGAACCAGGTGTTACCAAGCCTTACGAGCATGAGGTGGAATGGGGATGTGTCTGTGTCCTTGCCATTCTTGCTAAGAATCGGCCACAGCACCAACAACTCATTGTGGATGCTGGAGCTTTGGCATATCTTATGGATTTGTTGAAGAGGCACAAGACCTGTGGCAATTCACCAGCACTTATTGGACTTCTAAGGAGTGCAGCTAACGCCATCAACAACCTTGCGGCCGGAAATAGCAGCATTCAAACCCGTTTTGGGATGGAAGGCGGCATCCCTCTTCTTGTTGAATTGTTTGAATTTGATGATGCAGAGCTACAAAGTGCAGCTGCAGGAGCCTTATGTAGTCTTGCATTTAAAAATGATGAGAACCAAAACCAGATTCTCAAATTCAATGTACTGCCTACGCTTGTACTAATGCTTGGATCAGAGGATGCTACAATACATTGTGAAGCTGTTACCGCAATTTCAAGTCTGGCCACTTCTTCTCCACACATGACAACAGAAGTTCTTCTAGCTGGTGCTCTGCAACCGGTAATTATATTGCTTAGATCTTGCTGTTCCACGAGTCAAAGAAAAGCAGCTCGTTTAATTGGTATATTTGCAATGACAGATTCTGATTGCAAGGTTCAAATTGCTCAAAGAGGGGCTATCCCGCCATTGATTGATTTGCTTAACTCCCCACATGCAGAGCTTCGAGAGGTGTCAGCTTTTGCAATTGCAGTACTTGTTAAGGACCCACACAATCAAGTTGGTGTTGCTTATAATGGAGGTATAGAACCTTTACTCAACCTTCTTTCCTCCAAGAGTACAAATCTCCAACATCATGCAACCTATTCTGTGTACTGTCTTGCTAAAAATGAGGATAATGTTGCGGATATAGTTAAGTTTGGCGGTGTTCAAAAACTATTGGATGGAGATTTCAGAGCTGAACCTGCTAAACAGTTTGTAGGAGAGACAATGGAATTATTAGAGGAAAAAATGCATGGACGAGTGCTGAAACAACTGTTGTATCTTATGCGTTTCGGAGAAAAGGTTGTCCAAAGGCGTGTGGCTCTAGCTCTTGCTCGTTTATGTTCCCCTGATGATCAGAAATTTATTTTTGTTGACAACAATGGACTTGCTTTTTTGCTAGACCTTCTAACATCTAGAAACCTCAATAAAAAACGCGAGGCTTCAATGGCACTTCACTCTTTGGCTATCAGAACCACATCTATTTCTCCCTTAGAGACTACTTCTGCATCCACGACTCCTAAGGTATACATATGCGAGAAATATGTAAACAATCCTGCTCATTCTGATGTCACCTTTTTAGTTGAAGGAAAACGGTTCTATGCTCGTCGAATTTACTTACTTACTTACTCTGATGTGTTTCGAGCAATGCTTGATGGTGTTTACCGGGAGAAGGAAGCGAAAGATATACCAATTCCAAACATTAAATGGGTTGTCTTTGAATTGATGATGATATTTATTTATACTGGAACTGTAGATGTCAATTTGGATCTTGCTCAGGATCTTTTGAGAGCTGCTGATCAGTATCTTTTGGATGAACTTAAGGAATCCTGTGAATGTGTAATAGCTAAGGATATTTCTTTGGAAAATGTTTCTCAATTGTATGAGTTCTCAGAGTCAATGAATGCTATGTCATTGAAGCGAGCATGTACATTCTTTTTGTTGGAGCAATTTGACAAATTGAGGGTAAAACCATGGTATAGCCGCCTGATGCGTCGCATTGCCCCAGATGTGATTGAATTTTTCAGAAGTTTACTTGCCAATAGAATAGATAAGAAATAA 2097 0.4173 MSTGRRSLKRNRRQKFVEEGAVHPTTDRKVLALEPQQSLQDLLSEVVAQVTILNSSLSSSQSDRLAAMHANHLLFELAKNKLIVDTIVECGAVPSLLKHLKVPEPGVTKPYEHEVEWGCVCVLAILAKNRPQHQQLIVDAGALAYLMDLLKRHKTCGNSPALIGLLRSAANAINNLAAGNSSIQTRFGMEGGIPLLVELFEFDDAELQSAAAGALCSLAFKNDENQNQILKFNVLPTLVLMLGSEDATIHCEAVTAISSLATSSPHMTTEVLLAGALQPVIILLRSCCSTSQRKAARLIGIFAMTDSDCKVQIAQRGAIPPLIDLLNSPHAELREVSAFAIAVLVKDPHNQVGVAYNGGIEPLLNLLSSKSTNLQHHATYSVYCLAKNEDNVADIVKFGGVQKLLDGDFRAEPAKQFVGETMELLEEKMHGRVLKQLLYLMRFGEKVVQRRVALALARLCSPDDQKFIFVDNNGLAFLLDLLTSRNLNKKREASMALHSLAIRTTSISPLETTSASTTPKVYICEKYVNNPAHSDVTFLVEGKRFYARRIYLLTYSDVFRAMLDGVYREKEAKDIPIPNIKWVVFELMMIFIYTGTVDVNLDLAQDLLRAADQYLLDELKESCECVIAKDISLENVSQLYEFSESMNAMSLKRACTFFLLEQFDKLRVKPWYSRLMRRIAPDVIEFFRSLLANRIDKK 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00407 698 SMART arm_5 222 262 IPR000225 GO:0005515
Accr10g00407 698 SMART arm_5 347 387 IPR000225 GO:0005515
Accr10g00407 698 SMART arm_5 130 178 IPR000225 GO:0005515
Accr10g00407 698 SMART arm_5 80 128 IPR000225 GO:0005515
Accr10g00407 698 SMART arm_5 306 346 IPR000225 GO:0005515
Accr10g00407 698 SMART arm_5 264 304 IPR000225 GO:0005515
Accr10g00407 698 SMART arm_5 462 502 IPR000225 GO:0005515
Accr10g00407 698 SMART arm_5 180 220 IPR000225 GO:0005515
Accr10g00407 698 Pfam Armadillo/beta-catenin-like repeat 306 338 IPR000225 GO:0005515
Accr10g00407 698 Pfam Armadillo/beta-catenin-like repeat 222 261 IPR000225 GO:0005515
Accr10g00407 698 Gene3D - 165 290 IPR011989 -
Accr10g00407 698 Gene3D - 34 164 IPR011989 -
Accr10g00407 698 Gene3D - 291 408 IPR011989 -
Accr10g00407 698 SUPERFAMILY ARM repeat 432 503 IPR016024 -
Accr10g00407 698 SUPERFAMILY POZ domain 525 628 IPR011333 -
Accr10g00407 698 Gene3D Potassium Channel Kv1.1; Chain A 522 660 IPR011333 -
Accr10g00407 698 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 694 IPR044282 -
Accr10g00407 698 SUPERFAMILY ARM repeat 57 405 IPR016024 -
Accr10g00407 698 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 358 400 IPR000225 GO:0005515
Accr10g00407 698 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 317 359 IPR000225 GO:0005515
Accr10g00407 698 Gene3D - 416 521 IPR011989 -
Accr10g00407 698 Pfam BTB/POZ domain 526 627 IPR000210 GO:0005515
Accr10g00407 698 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 191 226 IPR000225 GO:0005515
Accr10g00407 698 ProSiteProfiles BTB domain profile. 534 601 IPR000210 GO:0005515
Accr10g00407 698 SMART BTB_4 534 631 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00407 Accr-Chr10 6754769 6759814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00407 310 405 U-box Gene Family AT5G40140 36.458 3.39e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Accr10g00407 BTB 3.2e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00407 - - rvl:131313530 760.755