Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00405 ATGGCACCAAAAAGCCAGACTGAGGTACCCATTAAGAAATTCATTAACCGAGGAGCTTGGACTCCCGAGGAAGATAGAAAGCTTGCTCAATGCATTGAACTTCATGGAGCTAAGAGGTGGAAGACTATTGCTCTTAAATCAGGTTTAAACAGATGTGGCAAGAGTTGCAGGCTGAGATGGCTCAACTATCTGAGACCAAACATCAAGAGAGGCAACATTTCACTTGAAGAAGAAGATTTGATTCTTAGGCTTCACAAACTCCTCGGAAATAGGTGGTCCTTGATAGCTGGGAGACTTCCAGGACGAACAGACAATGAAATAAAAAACTATTGGAATTCTCATTTGTGTAAAAAAGTCAACAATCTTGAAGAGAAGAAGAAGAAGAACCCAAGCACTAGTTCAACAACCCCACAAGAAAACACACCCCAAAATACTTGGGATAGTGCCATTGTGGAGAATGAGGAAGCCATTAATGGAAATGGAACAACTTTGAACTCGGAAGTTAGCTTTGATGTGAATGAATTCCTTGACTTCTCTGCCAAAGAAGGATCTTTTCATGAGTTGGATTGGGTAAACAAGTATCTAGAACTAGATGAGTTTCCAGGGAGCAATGGGGTATTTTGA 624 0.4087 MAPKSQTEVPIKKFINRGAWTPEEDRKLAQCIELHGAKRWKTIALKSGLNRCGKSCRLRWLNYLRPNIKRGNISLEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNNLEEKKKKNPSTSSTTPQENTPQNTWDSAIVENEEAINGNGTTLNSEVSFDVNEFLDFSAKEGSFHELDWVNKYLELDEFPGSNGVF 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00405 207 CDD SANT 74 115 IPR001005 -
Accr10g00405 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Accr10g00405 207 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Accr10g00405 207 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Accr10g00405 207 SUPERFAMILY Homeodomain-like 16 111 IPR009057 -
Accr10g00405 207 Gene3D - 17 69 - -
Accr10g00405 207 SMART sant 16 66 IPR001005 -
Accr10g00405 207 SMART sant 69 117 IPR001005 -
Accr10g00405 207 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Accr10g00405 207 CDD SANT 19 64 IPR001005 -
Accr10g00405 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Accr10g00405 207 FunFam MYB-related transcription factor 16 69 - -
Accr10g00405 207 Gene3D - 74 146 - -
Accr10g00405 207 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Accr10g00405 207 MobiDBLite consensus disorder prediction 131 145 - -
Accr10g00405 207 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 12 152 - -
Accr10g00405 207 MobiDBLite consensus disorder prediction 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00405 Accr-Chr10 6724422 6725654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00405 12 142 MYB Transcription Factor Family AT5G52600 59.542 4.86e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr10g00405 Myb_DNA-binding 3.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00405 K09422 - gmx:100799575 259.996