Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00401 ATGGAAACAGAACATAAAGAACCAGAAGCTTTCCTTCACTCTCAACTTCAATTAACCACTACCTCTTCTCCTTCTTCGTCCGGCACCACAAAAGTCATTAATGTACACCATGAAGTTCATAACAAAGAAGACAGGGTGAAGAGGAAGAAGACGATGAAGAAGAACACAGACATTGTGGACGGGAAGCACTCAACATACAGAGGCATACGTATGCGTCAAGGGGGGAAATGGGTTTCAGAAATCAGAGCACCCGGAAAGAAATCCAGAATGTGGCTCGGCACTTTTCCCACTGCGGAAATGGCCGCTCGAGCTCACGATGTCGCCGCTCTCAGCATTAAAGGCGCCTCTGCTTTCCTCAACTTCCCGGAGCTAGCCACCGTACTTCCTCGTCCGGCAAGTAACTCCCCAAAGGACGTCCAAGCCGCCGCCGCCAAAGCAGCCGCCATCAATTACCACATCAACCGTCAAGGACGACCCGAACCCGAGTCCGAGATCATGCCAGCCGACGCTCCGGCATTGTCAAGTTTGCCGTCAACGGAGGATGTTGACCCTATCTTCAACCACCCCGATATCTTAAATCACGGCGGTGGCGGAGGAAGGCAAGGCGTCAGCGCTGGCAAAGGACAGTGA 630 0.5238 METEHKEPEAFLHSQLQLTTTSSPSSSGTTKVINVHHEVHNKEDRVKRKKTMKKNTDIVDGKHSTYRGIRMRQGGKWVSEIRAPGKKSRMWLGTFPTAEMAARAHDVAALSIKGASAFLNFPELATVLPRPASNSPKDVQAAAAKAAAINYHINRQGRPEPESEIMPADAPALSSLPSTEDVDPIFNHPDILNHGGGGGRQGVSAGKGQ 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00401 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 42 189 - -
Accr10g00401 209 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Accr10g00401 209 FunFam Ethylene-responsive transcription factor 2 64 123 - -
Accr10g00401 209 Pfam AP2 domain 66 114 IPR001471 GO:0003700|GO:0006355
Accr10g00401 209 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Accr10g00401 209 SUPERFAMILY DNA-binding domain 64 123 IPR016177 GO:0003677
Accr10g00401 209 MobiDBLite consensus disorder prediction 13 30 - -
Accr10g00401 209 MobiDBLite consensus disorder prediction 157 209 - -
Accr10g00401 209 Gene3D AP2/ERF domain 65 123 IPR036955 GO:0003700|GO:0006355
Accr10g00401 209 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Accr10g00401 209 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Accr10g00401 209 CDD AP2 64 124 IPR001471 GO:0003700|GO:0006355
Accr10g00401 209 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00401 Accr-Chr10 6586324 6586953 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00401 60 151 AP2-EREBP Transcription Factor Family AT4G32800 70.652 8.87e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Accr10g00401 AP2 3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00401 - - pcin:129299286 214.542