Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00397 ATGACTAGGCGGTGCTCTCACTGCAGCCATAATGGCCACAATTCCAGGACCTGTCCTAACCGTGGAGTTAAGCTATTCGGAGTCCGATTGACTGATGGGTCAATCCGGAAGAGTGCTAGTATGGGCAATCTTAGCCACTACGCTGGTTCGAGTTCGGGGCCCCATCAGACTGGGTCTAACACACCGGGTTCTCCCGGCGAGACACCTGATCACGGTGCGGCCGCTGACGGATACGCCTCCGAGGATTTTGTACCTGGGTCGTCCTCAAGTTCACGTGAAAGGAAAAAGGGTGTTCCATGGACTGAGGAGGAACATAGAATGTTTCTACTTGGATTGCAGAAGCTAGGCAAAGGTGATTGGCGTGGAATTGCACGAAATTTTGTTATTTCAAGGACACCTACTCAAGTAGCCAGCCATGCTCAGAAATATTTCATTAGGCAAAGCAATGTGTCTAGGAGAAAAAGACGGTCCAGCTTGTTTGATATTGCTGCAGATGAACCAGCCGACACGCCCATGGTACCACAAGACCTTCAGTCAGCTAACGAGCCACCTGCTGAAGCAGAATGCAACAATAACCCTTTGCCTGATCCTCCAGCCCTTGATGAAGAATGTGAGTCCATGGATTCCACCAATTCAAATGATGGAGAGTTTGCCTCTATGAAGACAGATAGCACACAGTCACAAGCACAATCATCATACCCAGTGGTATATCCTGCATACTTCTCTCCAGTCTTCCCTTTCCCAATGCCCTATTGGTCGGGATACATGCCGGAGCCCAGTAAGAAGGAGGAGACACACGAGGTGCTGAAGCCTACTGCTGTGCATTCTAAGAACCCAATCAATGTTGATGAACTGGTGGGTATGTCTAAACTGAGTTTAGGAGACTCTATTGGTGACTCTGGACCTTCCTCTCTGTCACTGAACCTCCGTAAAGGGCCATCGAGGCAGTCAGCTTTTCATGCAACCCCAGCATGTGGGAATTCCGATGTGAATGGCAGTGTGATCCATGCGCTTTAA 1017 0.4946 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLSHYAGSSSGPHQTGSNTPGSPGETPDHGAAADGYASEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNFVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIAADEPADTPMVPQDLQSANEPPAEAECNNNPLPDPPALDEECESMDSTNSNDGEFASMKTDSTQSQAQSSYPVVYPAYFSPVFPFPMPYWSGYMPEPSKKEETHEVLKPTAVHSKNPINVDELVGMSKLSLGDSIGDSGPSSLSLNLRKGPSRQSAFHATPACGNSDVNGSVIHAL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00397 338 PANTHER TRANSCRIPTION FACTOR KUA1 3 277 - -
Accr10g00397 338 MobiDBLite consensus disorder prediction 164 228 - -
Accr10g00397 338 SMART sant 96 146 IPR001005 -
Accr10g00397 338 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Accr10g00397 338 MobiDBLite consensus disorder prediction 41 101 - -
Accr10g00397 338 MobiDBLite consensus disorder prediction 1 21 - -
Accr10g00397 338 NCBIfam myb-like DNA-binding domain, SHAQKYF class 95 147 IPR006447 GO:0003677
Accr10g00397 338 CDD SANT 99 144 IPR001005 -
Accr10g00397 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
Accr10g00397 338 MobiDBLite consensus disorder prediction 297 323 - -
Accr10g00397 338 MobiDBLite consensus disorder prediction 41 66 - -
Accr10g00397 338 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Accr10g00397 338 MobiDBLite consensus disorder prediction 210 228 - -
Accr10g00397 338 SUPERFAMILY Homeodomain-like 94 149 IPR009057 -
Accr10g00397 338 Gene3D - 98 150 - -
Accr10g00397 338 ProSiteProfiles SANT domain profile. 100 148 IPR017884 -
Accr10g00397 338 FunFam transcription factor MYB1R1 98 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00397 Accr-Chr10 6420303 6423295 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Accr10g00397 Myb_DNA-binding 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00397 - - pcin:129311785 626.32