Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00388 ATGAAGGGCGAAGAGGTGAAAAATGGAGAAGAAGAGAAATTATATTTTGGGGATTGCGATATCGGAAGAACAAGCTTAGTTGTCAGTGATGCGAAAAGGGTACTTGTTGGAGCAGGGGCTCGTGCACTCTTCTATCCCACTCTGCTTTACAATGTTATTAGAAATAGGTTTCAGGCTGAGTTTCGATGGTGGGATAAAGTTGATGAGTTCATATTATTAGGTGCTGTTCCATTTCCTATTGATGTTCCCCGCTTAAAGGAGCTTGGCGTTTGTGGAGTCATCACATTGAATGAGTCATATGAGACTTTGGTTCCAACCACACTATATCATGCTTATGGAATTGATAATTTGGTTATTCCTACCAGAGATTATTGTTTTGCGCCATCATTACACAACATATGCCGTGCTGTGGACTTCCTACATGAAAATGCATCGAGTGGGAGAAGTACGTATGTGCACTGCAAAGCTGGGCGTGGTCGCAGCACAACTATTGTTATCTGTTACTTGGTACATTACAAGATGATGACGCCTGATGCTGCATATGATTATTTAAAGTCAATTCGGCCAAGAGTCCTACTAGCTTCTTCTCAGTGGCAAGCTGTTGAGGAATACTACCAGCTTATGGTGAAGAAGACAATGTTGTACGGTCCCATGGTAGTATCAAAAGATTTTATGGTAAATTTTGACGATGAGGGGTCAGTGGTAGTGACAGAAGTAGATTTTCAAGGGTACGAGGCAAGTATGGAGTCAGGATCAGGTGGTGTATGGGGAGATGTAAGTTTGGTGTACCAGGCTGCACTAGCAAGAATCTCATGGCTCACGCTTCCATATCTCTCACAACCAAAGAAAATGAAGCCCCAGTCATTGTTTTTTTGGTAA 879 0.4232 MKGEEVKNGEEEKLYFGDCDIGRTSLVVSDAKRVLVGAGARALFYPTLLYNVIRNRFQAEFRWWDKVDEFILLGAVPFPIDVPRLKELGVCGVITLNESYETLVPTTLYHAYGIDNLVIPTRDYCFAPSLHNICRAVDFLHENASSGRSTYVHCKAGRGRSTTIVICYLVHYKMMTPDAAYDYLKSIRPRVLLASSQWQAVEEYYQLMVKKTMLYGPMVVSKDFMVNFDDEGSVVVTEVDFQGYEASMESGSGGVWGDVSLVYQAALARISWLTLPYLSQPKKMKPQSLFFW 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00388 292 SMART dsp_5 66 207 IPR020422 GO:0006470|GO:0008138
Accr10g00388 292 Gene3D Protein tyrosine phosphatase superfamily 63 213 IPR029021 -
Accr10g00388 292 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 56 210 IPR029021 -
Accr10g00388 292 CDD PTPMT1 63 206 IPR044596 GO:0004721
Accr10g00388 292 FunFam Dual specificity phosphatase domain protein 63 210 - -
Accr10g00388 292 Pfam Dual specificity phosphatase, catalytic domain 103 206 IPR000340 GO:0008138|GO:0016311
Accr10g00388 292 ProSiteProfiles Dual specificity protein phosphatase domain profile. 63 210 IPR020422 GO:0006470|GO:0008138
Accr10g00388 292 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 131 199 IPR000387 GO:0016311|GO:0016791
Accr10g00388 292 ProSitePatterns Tyrosine specific protein phosphatases active site. 152 162 IPR016130 GO:0016311|GO:0016791
Accr10g00388 292 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 13 275 - -
Accr10g00388 292 SMART ptp_7 105 216 IPR003595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00388 Accr-Chr10 6166321 6168649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00388 21 289 Protein tyrosine phosphatase (PTP) family AT2G35680 56.419 1.10e-110 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00388 - - jre:108994353 404.445