Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00387 ATGCTCTTCTTTCTTGCCGTTTCTTACTTACTTGACCTTATTCTGGATACAGTACCAATCAATTCATTCCCTCCTTGGATCAATTTCAGTGTCTTACTGGGCGAAGAGGTGAAAAATGGAGAAGAAGAGAAATTATATTTTGGGGATTGCGATATCGGAAGAACAAGCTTAGTTGTCAGTGATGCGAAAAGGGTACTTGTTGGAGCAGGGGCTCGTGCACTCTTCTATCCCACTCTGCTTTACAATGTTATTAGAAATAGGTTTCAGGCTGAGTTTCGATGGTGGGATAAAGTTGATGAGTTCATATTATTAGGTGCTGTTCCATTTCCTATTGATGTTCCCCGCTTAAAGGAGCTTGGCGTTTGTGGAGTCATCACATTGAATGAGTCATATGAGACTTTGGTTCCAACCACACTATATCATGCTTATGGAATTGATAATTTGGTTATTCCTACCAGAGATTATTGTTTTGCGCCATCATTACACAACATATGCCGTGCTGTGGACTTCCTACATGAAAATGCATCGAGTGGGAGAAGTACGTATGTGCACTGCAAAGCTGGGCGTGGTCGCAGCACAACTATTGTTATCTGTTACTTGGTACATTACAAGATGATGACGCCTGATGCTGCATATGATTATTTAAAGTCAATTCGGCCAAGAGTCCTACTAGCTTCTTCTCAGTGGCAAGCTGTTGAGGAATACTACCAGCTTATGGTGAAGAAGACAATGTTGTACGGTCCCATGGTAGTATCAAAAGATTTTATGGTAAATTTTGACGATGAGGGGTCAGTGGTAGTGACAGAAGTAGATTTTCAAGGGTACGAGGCAAGTATGGAGTCAGGATCAGGTGGTGTATGGGGAGATGTAAGTTTGGTGTACCAGGCTGCACTAGCAAGAATCTCATGGCTCACGCTTCCATATCTCTCACAACCAAAGAAAATGAAGCCCCAGTCATTGTTTTTTTGGTAA 972 0.4198 MLFFLAVSYLLDLILDTVPINSFPPWINFSVLLGEEVKNGEEEKLYFGDCDIGRTSLVVSDAKRVLVGAGARALFYPTLLYNVIRNRFQAEFRWWDKVDEFILLGAVPFPIDVPRLKELGVCGVITLNESYETLVPTTLYHAYGIDNLVIPTRDYCFAPSLHNICRAVDFLHENASSGRSTYVHCKAGRGRSTTIVICYLVHYKMMTPDAAYDYLKSIRPRVLLASSQWQAVEEYYQLMVKKTMLYGPMVVSKDFMVNFDDEGSVVVTEVDFQGYEASMESGSGGVWGDVSLVYQAALARISWLTLPYLSQPKKMKPQSLFFW 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00387 323 CDD PTPMT1 94 237 IPR044596 GO:0004721
Accr10g00387 323 Pfam Dual specificity phosphatase, catalytic domain 134 237 IPR000340 GO:0008138|GO:0016311
Accr10g00387 323 ProSitePatterns Tyrosine specific protein phosphatases active site. 183 193 IPR016130 GO:0016311|GO:0016791
Accr10g00387 323 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 54 306 - -
Accr10g00387 323 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 87 241 IPR029021 -
Accr10g00387 323 ProSiteProfiles Dual specificity protein phosphatase domain profile. 94 241 IPR020422 GO:0006470|GO:0008138
Accr10g00387 323 Gene3D Protein tyrosine phosphatase superfamily 94 244 IPR029021 -
Accr10g00387 323 SMART dsp_5 97 238 IPR020422 GO:0006470|GO:0008138
Accr10g00387 323 SMART ptp_7 136 247 IPR003595 -
Accr10g00387 323 FunFam Dual specificity phosphatase domain protein 94 241 - -
Accr10g00387 323 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 162 230 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00387 Accr-Chr10 6166321 6169122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00387 52 320 Protein tyrosine phosphatase (PTP) family AT2G35680 56.419 2.12e-110 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00387 - - jre:108994353 404.445