Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00380 ATGGCCCACTCACTTAGGCAAAGAAAGCAAAGCACTAATTATGCAGATTCAGGCAGTCCTGGAAGTGATTCAATTGGTTCTAATGCAGACTACTTATCAAGGACCTGTAATAGACGAAAAAAGAAAAGGAACTTGACATTATGCTCTACAGCTACAAAGGAGACTAAAACAACAAACTCAAGTGTAAATTTGACTGCAAGGCGTCGACGAGGTCATACCTCAAAGAAGAGGGTTCAGGAAGTACAAAACAAGGAAGCCAGTGATCCTACAAGTTCAAACAAGAAAGATGTAACATTGTGTGCTGACCAATTAAGTTCAAACAAAACAACCATTTTATCATGGTTGATAGATTGCAATGTTATCAAGGAGGGTGAGCATGTCACCTGCTCAAATGAAATAAAGGGTAATCCAGCTAAGATAGGAAAAATTGCCAGAGGTGCAATTCTCTGCAGCTGTTGCCACAGGGAATATTCTGTGTGGGGCTTTGAGAAACACTGTGAAATTGATCTTAAAAAACCCTATCAAGATATTCACCTCCTTGAAAAACGAGCATCTCTACTGGAGTTTATAAGGATTGCTTGGCAGGAGAATGGTGAACTGAAACACCTGGAAGCACACTCCTCTAAACGCACAAGAAATTCAAAAGACAACCATGATTATGCTTGTCCTGTTTGTGGAGACGGGGGAGACTTAATCTGCTGTGACAAGTGCCTTGCCACATATCATCTAGACTGTTTGAATTTGGAGAGGCTTCCTGAAGGTGATTGGTTCTGTCCTTATTGCGTATGCAAACATTGTGGGCTTGGTGATAAAAGCAAGCAATTGATTGCATGCTTCCAATGTAACAAAAAATTTGAGTGGGGATGCTTTAAGGAATTTGAGAAAGATGCTCTTAAAGATGCCTTGGACCCTGACTGCTCGCGTTTATATTGTGGGCAAAGTTGTAGACAGGCCTATGAGATGTTGGAGGGTTCTGTTGGAGTCAGGAACGAAATGACTGGAAGCTACACTTGGAGAGTTATTCGTCCAATGGATGGGACATCAACTGTCTCTAAACACCAATATTTTGAAAATAATGTTAAGGTTGCAATTACGTGGAAATTAATGAATGAAGCTTTTGTGCCAATAGTTGACAGATACTCAGGCCACAATGTGGTTCAAAGTGTACTATACAGTCTTGGGTCAGAATTACCCAGGATTGATTATAGCCGTTTCTATACATTTATACTGGAAAAAGATGATGAGGTTGTCTCTGCTGCTTCTGTGAGAGTCCATGGGCAGAGGCTTGCAGAAATGGCCTTTATGGCCACACATAAAAATTATCAAAGAAAAGGATACTGTGGATACCTTTTGGCCATTGTGGAATCGGTCCTTCGCCGTCTCTCAGTTCAAAGCTTAATAATCCCGGCAATTCCAGAGCGCGCCAGCATGTGGAGGGATAAGTTTGGATTTAGTGATCTGACTATAGAGCTGAAAAGAGAACTAGCCTCCTTCAACATTTTGATGTTTTTGGAATCTCTATTACTGGTCAAGGACTTAGGCAGACAGAAGAATCTGATCGCGGTGACCGATCTGTTCTAG 1581 0.4137 MAHSLRQRKQSTNYADSGSPGSDSIGSNADYLSRTCNRRKKKRNLTLCSTATKETKTTNSSVNLTARRRRGHTSKKRVQEVQNKEASDPTSSNKKDVTLCADQLSSNKTTILSWLIDCNVIKEGEHVTCSNEIKGNPAKIGKIARGAILCSCCHREYSVWGFEKHCEIDLKKPYQDIHLLEKRASLLEFIRIAWQENGELKHLEAHSSKRTRNSKDNHDYACPVCGDGGDLICCDKCLATYHLDCLNLERLPEGDWFCPYCVCKHCGLGDKSKQLIACFQCNKKFEWGCFKEFEKDALKDALDPDCSRLYCGQSCRQAYEMLEGSVGVRNEMTGSYTWRVIRPMDGTSTVSKHQYFENNVKVAITWKLMNEAFVPIVDRYSGHNVVQSVLYSLGSELPRIDYSRFYTFILEKDDEVVSAASVRVHGQRLAEMAFMATHKNYQRKGYCGYLLAIVESVLRRLSVQSLIIPAIPERASMWRDKFGFSDLTIELKRELASFNILMFLESLLLVKDLGRQKNLIAVTDLF 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00380 526 Gene3D - 395 503 - -
Accr10g00380 526 ProSiteProfiles Zinc finger PHD-type profile. 219 264 IPR019787 -
Accr10g00380 526 MobiDBLite consensus disorder prediction 57 93 - -
Accr10g00380 526 CDD NAT_SF 408 468 - -
Accr10g00380 526 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 368 486 IPR016181 -
Accr10g00380 526 Pfam PHD-finger 222 263 IPR019787 -
Accr10g00380 526 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 364 510 IPR000182 GO:0016747
Accr10g00380 526 SUPERFAMILY FYVE/PHD zinc finger 209 263 IPR011011 -
Accr10g00380 526 MobiDBLite consensus disorder prediction 1 36 - -
Accr10g00380 526 MobiDBLite consensus disorder prediction 1 33 - -
Accr10g00380 526 SMART PHD_3 221 262 IPR001965 -
Accr10g00380 526 Pfam Tify domain binding domain 141 187 IPR032308 -
Accr10g00380 526 CDD PHD2_CHD_II 222 261 - -
Accr10g00380 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 301 IPR013083 -
Accr10g00380 526 PANTHER PHD FINGER PROTEIN 12 55 516 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00380 Accr-Chr10 6048411 6051855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00380 90 521 PHD Transcription Factor Family AT1G05380 37.557 6.45e-91 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Accr10g00380 TDBD 2.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00380 - - pcin:129311154 693.345