Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00365 ATGGTTAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGCAATGGCCCGCCAGAGAAGCCAGTGCTATGCAATGCATGTGGATCTCGATGGAGAACAAAGGGAACCCTGGCAAATTATACCCCTCTACATGCTCGGACTGAAACCGATGATTATGAGGATCCAAGGCTTTCCAGGGCAAAGAACATAACATTAAATAAGAACAAAGAAGTGAAATTGCTCAAAAGAAAGCATAACCATGATAATTTTGTATTCGGTTGGGTTGCCCCTGATTACAACCAAGGATCTCTAAAGGTTATTGATGAAGAGGCCAGCAATAGATCAAGTTCAGGATCAGCTGGCTCTAACTCAGAGAGCTGTGCTCAATTTGCTGGAACAGATGCTAGTGACCTGACAGGTCCTGCTCAGTCAGTGGTAGGGGGTGGTATGGTGCCCTCAAGAAAGAGAACCTGTGTGAACCGTCAAAAGCCATCTTCTGTTGAGAAGCTCACAAAAGATTTATATACTATCCTTCATGAACAGCAGTCCTATTTCTCTGCATCTTCTGAAGAGGATCTAATTTTTGACAGTGAAACACCAATGGTCTCTGTTGAAATAGGACATGGAAGTGTTCTCATTAGGCATCCTAGCTCTATAGCCCGTGAGGAAGAATCTGAGGCTAGCTCCCTTTCAGTTGACAACAAACAATGCCCAACAAGTGAGGCATATTCGTGCTCTGGTGCTGTTGATACGAATAATGATTTCACTGGCATGAACTTTTCATCTCATGGAGTTGAAATTATCAACTACTCTGCTAGCCAAGGAATTCAGCGGGAGAAACTTAAAAGGCAACCTGAAACTTCACAAATCGTTGGATATCATGATTCACCATTGTGCCTGATAGATTTAGTTGATGTTGTAAACTATGAGGTGTTCTTGACGAAATTGACAAATGAGGAGCAGCAAAAATTACTCAAGTGTCTCCCTGCCGTTGATACCGCTAAACTTCCTGACAGCCTTAAAAGCATGTTCAACAGCTCTCAGTTCAGAAAGAACTTAACTTACTTTCAAGAGCTTCTTGGCGAAGGTGTATTTGATACCTCTTCATCAGGGGCAAACGCTGGAGATTGCCAGGCTTTGAAACGGCTTGCATTATGTGATTTTTCACAGTCAAAATGGGTGGAACAATATAATATACTTAAGAGATGTAAATATGGAGATGAAAAATCTGTTGCTTTTGGATGTACTGGCTCTGCATCCAGTAAAGCTGCAAATGAGAAGAGATCGCATGACGGCTCAAAACAAAGTTTTCCTGAACTGAACTCAACATTTAGGAGCCCCAAAAGGGTGTTGATGATGAAGGCTGGTAGTGAGGGCAAGGAAGTCTTTGAAGATGGCTCTTGCTTCAGTCCAAATGGCTTATTGGCTTTGCCCTCTGATGGCAGCCCACATATGCTGGATGAGAGTTCTGATCAAGATCTCCTGCTCGAAGTGCGATCTAACAGTTCTTTCCCGGAAGCAGAACTGCTGTTTCCAGCCTTAAGATTTGGTACTCAGCTCAGCGCTAGCTGTAGCTATGGCCATTACTGA 1584 0.4356 MVKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTETDDYEDPRLSRAKNITLNKNKEVKLLKRKHNHDNFVFGWVAPDYNQGSLKVIDEEASNRSSSGSAGSNSESCAQFAGTDASDLTGPAQSVVGGGMVPSRKRTCVNRQKPSSVEKLTKDLYTILHEQQSYFSASSEEDLIFDSETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVDNKQCPTSEAYSCSGAVDTNNDFTGMNFSSHGVEIINYSASQGIQREKLKRQPETSQIVGYHDSPLCLIDLVDVVNYEVFLTKLTNEEQQKLLKCLPAVDTAKLPDSLKSMFNSSQFRKNLTYFQELLGEGVFDTSSSGANAGDCQALKRLALCDFSQSKWVEQYNILKRCKYGDEKSVAFGCTGSASSKAANEKRSHDGSKQSFPELNSTFRSPKRVLMMKAGSEGKEVFEDGSCFSPNGLLALPSDGSPHMLDESSDQDLLLEVRSNSSFPEAELLFPALRFGTQLSASCSYGHY 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00365 527 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Accr10g00365 527 PANTHER OSJNBB0038F03.10 PROTEIN 7 523 IPR044589 -
Accr10g00365 527 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Accr10g00365 527 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 45 - -
Accr10g00365 527 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Accr10g00365 527 Gene3D - 3 86 IPR013088 GO:0006355|GO:0008270
Accr10g00365 527 MobiDBLite consensus disorder prediction 420 439 - -
Accr10g00365 527 MobiDBLite consensus disorder prediction 108 132 - -
Accr10g00365 527 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Accr10g00365 527 Gene3D - 291 389 IPR038108 -
Accr10g00365 527 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 292 401 IPR044867 -
Accr10g00365 527 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Accr10g00365 527 Pfam Asx homology domain 276 366 IPR028020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00365 Accr-Chr10 5769719 5774784 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00365 1 508 C2C2-Gata Transcription Factor Family AT4G17570 51.810 7.73e-145 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr10g00365 ASXH 9.4e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00588 9 6796028 6801682 Accr10g00365 10 5769719 5774784 CCT