Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00301 ATGGGTTGCAATGTAAGGGAAAAGCATCTCCGTGCGAATCGGAGACCTCGATCATCCAAATCTGATATGGAGTCATGTTGTTTTCTCGACAATGCTTCTTTCTCCAAATCTATACTGGAATCAAGCATTAAGCCGTTGAAAAACCATCTCGCTATCAACGATTCTTCACAAAATCTAAGTTCCAACTCTAATCATACCCTTAACCCTAATTTCTCCCTTAATGTTGAGGAAACCGGCTGGGGTTACTGCACAGAAGAACAATTAGAAGAAATATTCTTAAAAAACTTGGAATATTTATATAATGAGGCTGTATCAAAGTTTGTTGCGTTGGGCTACGATGAGGACGTTGCTATCAAGGCAATACTGCGGAATGGGCACTGTTGTGGTGGAAGAGATGCGCTCACCAATATATTACATAATTCGTTGGCTTATTTGAATAGTAACTGTAGTAGTAATTGTACTAGTGGTAATGGCAATTCGGATGAATCCGATTCTGCTTTCTCTGACTTGAGGCAGTTGGAGGAATACTCTCTGGAACGCATGGTCGGTTCGCTCCGACAACTCAGGCCGCATTTGAGTAAAGGCGATGCTATGTGGTGTTTGCTTATGAGTGATCTTCATGTAGGACGGGCAAGTGCTATGGAAACTCCATTGCATCCTGCTCCAGGTAATGGTTGTCCAGCTCCTACTGCCTCTGAGGCTGTTAGCAATTCTGTTGGTGTTTTGGCCCCTACCCTGTGTAGGTTTCATGGGGGTTGGGGATTTGGAAATGGGGGAGGCTCAGATCTCCCCTTCAATGGATTCTTCTCTTATAGCGCAGAGATGAATTTACAAAGAGATATTGAGCTTCCCAAAAGGTTTAATCTTTCTCCTTCAATGAAGTCTTTATTGAAAAGAAATGTTGCAATGTTTGCTGCTGGTTTTAGGGCAAATTCAAAACAATTGCAGACACAGGCTAAGGCCTCTCCCAGCGCTATCACTTTGTCAAGCTTGGAATCTCCAGCTGTATCTGGGATTGATGTCCCAACTGAGCAGTCTGGGGATTCTCAGAAGCTGAATAACCATGATGTGGTATACTCAGTGTTGAGCAAATTCCGTGATCTGAATCTTGATGAGAATTTGGAGCATGTGACAGAAGATCAGAAAGATGAGGCAATTGTCAATCTGTTTCATCAGATTAAGGATCTTGAGAAACAGCTAAAGGAGCGAAAAGATTGGGCCCATCAGAAGGCAATACAGGCCGCAAGAAAGCTAAGCAATGATTTGACTGAACTGAAAATGTTGAGGATGGAAAGAGAGGAGACTCAGAGATTGAAGAAAGGGAAACAGGCGCTTGAGGACACAACCATGAAAAGACTCTCAGAGATGGAGAATGCTTTAAGAAAGGCCAGTGGTGAAGTGGACCGTGCAAATGCAGCTGTGAGACGGCTTGAGACAGAGAATGCAGAAATTAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCTTCAGAATCAGTTTCAACTTGCTTGCAAGCAGCAAAGAGGGAGAAAAAGTACATGAAGAGGCTTGTAGCTTGGGAAAAACAGAAAGCTCAGCTACAGCGAGAAATTTCAGATGAGAAAGGGAAGATATTGGAGATACAGGAAGAATTAGTTCGGATCAAACAGCGTCAAAAAGATGCCGAGGTCAAGTGGAGGGAGGAGTTGAAGGCTAAAGAGGAAGCCTTAGGATTAGTTGAGGAGGAGCAACGCTCTAAGGAAGCAGCAGAGGCCAATAACAAGCGGAAGGTTGAAGCTTTGCGCCTAAAGATAGAGATAGATTTCCAGCGCCACATGGATGATCTCCTAAGGCTCGAGCAGGAGCTTTCACGCATAAAAGCATCTGCTCAGTCAGCTGACTTTCAAAGTCAATCAAATACTTCACCTGCAAGTGAGTCTGAGGGTGCAAAGCCCCAAGGAGAGACAATTGCTAAGATGCTTCAAGAATTAGAGAAACAGGAGGCTTTTTCAGATAAAGAAGTGAACTGTGATAGGGAATGCATAATATGCATGAACGATGAAGTCTCTGTTGTTTTCTTGCCTTGTGCCCACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGGAGGAAGGGAAAAGCTGCTTGTCCTTGCTGTCATGTTCCGATTGAGCAGAGGATTCACGTATTTGGGGCAAGTTCGTAG 2184 0.4377 MGCNVREKHLRANRRPRSSKSDMESCCFLDNASFSKSILESSIKPLKNHLAINDSSQNLSSNSNHTLNPNFSLNVEETGWGYCTEEQLEEIFLKNLEYLYNEAVSKFVALGYDEDVAIKAILRNGHCCGGRDALTNILHNSLAYLNSNCSSNCTSGNGNSDESDSAFSDLRQLEEYSLERMVGSLRQLRPHLSKGDAMWCLLMSDLHVGRASAMETPLHPAPGNGCPAPTASEAVSNSVGVLAPTLCRFHGGWGFGNGGGSDLPFNGFFSYSAEMNLQRDIELPKRFNLSPSMKSLLKRNVAMFAAGFRANSKQLQTQAKASPSAITLSSLESPAVSGIDVPTEQSGDSQKLNNHDVVYSVLSKFRDLNLDENLEHVTEDQKDEAIVNLFHQIKDLEKQLKERKDWAHQKAIQAARKLSNDLTELKMLRMEREETQRLKKGKQALEDTTMKRLSEMENALRKASGEVDRANAAVRRLETENAEIKAEMEASKLSASESVSTCLQAAKREKKYMKRLVAWEKQKAQLQREISDEKGKILEIQEELVRIKQRQKDAEVKWREELKAKEEALGLVEEEQRSKEAAEANNKRKVEALRLKIEIDFQRHMDDLLRLEQELSRIKASAQSADFQSQSNTSPASESEGAKPQGETIAKMLQELEKQEAFSDKEVNCDRECIICMNDEVSVVFLPCAHQVMCASCSDEYGRKGKAACPCCHVPIEQRIHVFGASS 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00301 727 CDD RING-HC_MIP1-like 670 722 - -
Accr10g00301 727 SMART ring_2 673 712 IPR001841 -
Accr10g00301 727 PANTHER OS05G0141500 PROTEIN 1 722 IPR046934 -
Accr10g00301 727 SUPERFAMILY RING/U-box 661 719 - -
Accr10g00301 727 Coils Coil 453 494 - -
Accr10g00301 727 Pfam Zinc finger, C3HC4 type (RING finger) 670 718 - -
Accr10g00301 727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 724 IPR013083 -
Accr10g00301 727 Pfam Family of unknown function (DUF6592) 95 214 IPR046527 -
Accr10g00301 727 ProSiteProfiles Zinc finger RING-type profile. 673 713 IPR001841 -
Accr10g00301 727 Coils Coil 565 592 - -
Accr10g00301 727 MobiDBLite consensus disorder prediction 622 641 - -
Accr10g00301 727 MobiDBLite consensus disorder prediction 1 23 - -
Accr10g00301 727 Coils Coil 509 557 - -
Accr10g00301 727 MobiDBLite consensus disorder prediction 622 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00301 Accr-Chr10 5064165 5068314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00301 673 723 C3H Transcription Factor Family AT1G73950 43.137 6.39e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00301 - - gmx:100797917 1006.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00511 9 5784053 5787598 Accr10g00301 10 5064165 5068314 CCT