Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00298 ATGCCAGTTCCACTTGCCCCTTACCCCACACCCCCAGCTCCATATACGCCACCAGCTAATGGAGGTACACAACAGAGTCAGCTTGTATGTTGTGGGTGTAGAAACCTTCTTCTCTATCCAGTTGGAGCAACATCTGTGTGCTGTGCTGTTTGCAATGCAGTCACTGCAGTGCCACCTCCTGGCACAGAAATGGCTCAGTTGGTTTGCGGAGCCTGCCACACATTACTCATGTACATACGAGGGGCAACAAGCGTGCAATGCTCCTGCTGTCACATTGTAAATCTCGCACTGGAAGCAAATCAGGTGGCTCATGTCAATTGTGGCAACTGTAGGATGCTACTGATGTATCAATACGGAGCAAGATCTGTTAAATGTGCGGTGTGCAATTTTGTAACATCTGTTGGGGCCTCAGCAAGTACAGTTGATCAGAAGTTCAGCGCCTAA 444 0.491 MPVPLAPYPTPPAPYTPPANGGTQQSQLVCCGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGACHTLLMYIRGATSVQCSCCHIVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTVDQKFSA 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00298 147 PANTHER PROTEIN LSD1 16 57 IPR040319 -
Accr10g00298 147 Pfam LSD1 zinc finger 69 93 IPR005735 -
Accr10g00298 147 Pfam LSD1 zinc finger 30 54 IPR005735 -
Accr10g00298 147 Pfam LSD1 zinc finger 107 131 IPR005735 -
Accr10g00298 147 NCBIfam zinc finger domain, LSD1 subclass 104 134 IPR005735 -
Accr10g00298 147 NCBIfam zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Accr10g00298 147 NCBIfam zinc finger domain, LSD1 subclass 66 95 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00298 Accr-Chr10 5023451 5025464 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Accr10g00298 zf-LSD1 6.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00298 - - qsu:112000975 254.988