Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00294 ATGGATTCGCGGGAGCCGCAGCCCCATCAACCGCCGCAATTACAGTCGATGGCACAAGCACAACCACCGTCTGCAGCGCCTAACATGATGATGGGACCGACTTCGTATGGTTCTGTCATGCCGAACCCGAACACATCTACCCTGATCAGCCCCAATTCGACTGCCGCGATGATGGCCCCTGCCACCGTCGGACGATTCCCCTTCAACACCGTGGTTCAACAACCTCCTGCTCCGTCTAAACCAATGGAGCATCTGAACAACAATGCTAGTCCTTTCGATGGGTCATCGCCCGCGATGAGGCCATGTGGGTTTAGTATTGAGTCTACGAAGAAGAAGAGAGGCCGGCCAAGGAAGTATTCGCCGGATGGTAACATTGCTTTGGGTTTGACTCCCACTCCCGTGTCTACTTCTGCTGCTGGTCCAGGAGATTCAAGCGGTACCCCTTCGACGGAACCTGGAACCAAGAAGCACAGGGGAAGGCCACCAGGTTCTGGAAAGAAGCAGCTGGATGCTCTTGGAGCTGGCGGTGTTGGTTTTACTCCGCACGTAATATTGGTACAAGCCGGTGAGGACATTGCTGGAAAGATTTTGGCATTTTCACATCAAGGGCCTAGGACAGTTTGCATTCTTTCTGCGGTTGGTGCAATCAGCAATGTTACCCTTAGACAGGGCGCAATTTCTGGCGGTACTGTGCAATATGAGGGCCGATTTGAGATCATATCGCTATCAGGTTCTTTCGAGCCATCTGATGAGACTGGTCGTAGCAGAGCAGGTGGTTTCAGTGTGTCTCTTGCGGGGTCAGATGGTAAAGTTTTAGGTGGCGGAGTTGCTGGAACGCTAATCGCTGCATCCACAGTGCAGGTTATTGTGGGTAGCTTTATTGCTGATGGGAAAAAGTCAAGCTCAAATACTCAGAAATCGGGGCCTTCTTCAGCACCAGTTTCCCAGATGTTAAATTTTGGTGCACCGACAACTTCTACCAGCCCTACCTCTCAAGGCCCTTCATCTGAGTCCTCTGAAGAGAATGAGAATAATGGTGATTTTAATAGGGGACCTGCACTCTACAATAATACTACCCAGCCCTCGATTCACAATATGCAGATGTATCATCCTCAACTATGGGCTGGTCAAACCCAGCAGTGA 1143 0.5101 MDSREPQPHQPPQLQSMAQAQPPSAAPNMMMGPTSYGSVMPNPNTSTLISPNSTAAMMAPATVGRFPFNTVVQQPPAPSKPMEHLNNNASPFDGSSPAMRPCGFSIESTKKKRGRPRKYSPDGNIALGLTPTPVSTSAAGPGDSSGTPSTEPGTKKHRGRPPGSGKKQLDALGAGGVGFTPHVILVQAGEDIAGKILAFSHQGPRTVCILSAVGAISNVTLRQGAISGGTVQYEGRFEIISLSGSFEPSDETGRSRAGGFSVSLAGSDGKVLGGGVAGTLIAASTVQVIVGSFIADGKKSSSNTQKSGPSSAPVSQMLNFGAPTTSTSPTSQGPSSESSEENENNGDFNRGPALYNNTTQPSIHNMQMYHPQLWAGQTQQ 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00294 380 CDD DUF296 180 293 IPR005175 -
Accr10g00294 380 SUPERFAMILY AF0104/ALDC/Ptd012-like 179 294 - -
Accr10g00294 380 MobiDBLite consensus disorder prediction 74 172 - -
Accr10g00294 380 MobiDBLite consensus disorder prediction 129 152 - -
Accr10g00294 380 MobiDBLite consensus disorder prediction 298 360 - -
Accr10g00294 380 Gene3D - 181 307 - -
Accr10g00294 380 Pfam Plants and Prokaryotes Conserved (PCC) domain 181 293 IPR005175 -
Accr10g00294 380 SMART AT_hook_2 155 167 IPR017956 GO:0003677
Accr10g00294 380 SMART AT_hook_2 110 122 IPR017956 GO:0003677
Accr10g00294 380 ProSiteProfiles PPC domain profile profile. 175 314 IPR005175 -
Accr10g00294 380 MobiDBLite consensus disorder prediction 1 45 - -
Accr10g00294 380 MobiDBLite consensus disorder prediction 1 23 - -
Accr10g00294 380 MobiDBLite consensus disorder prediction 74 94 - -
Accr10g00294 380 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 55 343 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00294 Accr-Chr10 4965272 4970760 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00294 80 380 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 46.647 2.03e-72 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00294 - - qsa:O6P43_033975 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00506 9 5725533 5729518 Accr10g00294 10 4965272 4970760 CCT