Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00285 ATGGGAAAGCTTGATGCAGGATTTGATACTACCTGGAACGCTGCAAATGGCATCATCCTCACAAGCAATAATCCCTCAACTTCAGAATCTGTAGTCAACACCCAACATCACATGGTGGCAAATTCTCATGATTATTCTGGCTTCATGGTACAAGACAAGCCTTATTCCTTTGATGATCCTTCAAAGAGGTACTTGCGTCAAACAAATATTAAAGAAACAGACAGGAGGCCAGAGGGTAGAAATTCACGAGTACAAGATCACTTACTTGCTGAGAGAAACAGGAGAGGAAAGATCTCCCAACACTTCATTGCCCTCTCAGCCCTAATTCCTGGCCTCAAAAGGACGGACAAGGCATCTTTGTTGGAGGGAGCTATAAGGCACGTGAAGCAGCTTCAAGAACAAGTGAAAGCACTGGAACAACAGCCCAAGAAGAAGAAGAAAACTGCTGAATCTGTGGTGTTTGTGAAGAAGTCTCAGCTGACTTCTACTACGGACACGACGTCGTTAAATAATAATTCATCAGATATTGAAAACTTGGATGATGTCTCAAAATGGAATAGCAGAGTAGCAAAAGCAGATGTTGAAGCAAGGGTTTCAGAAAAGAAGGTGTTGATTAGAGTGCAATGTGAGAAAAAAGAAGGAATAATGGTGAAGACAATGAAGGAGATTCAAAAACTCCACTTGTCTGTGATAAATAGTAGCGTGATGCCATTTGGGAGATCCATTCTAGACATCACTATCATAGCTGAGATGGAAGATGAGTTCAACTTGAGCAGCCAAGAGCTCGCTAGAAATATCAGGGTGGCACTCTTACAATCAATATAA 825 0.417 MGKLDAGFDTTWNAANGIILTSNNPSTSESVVNTQHHMVANSHDYSGFMVQDKPYSFDDPSKRYLRQTNIKETDRRPEGRNSRVQDHLLAERNRRGKISQHFIALSALIPGLKRTDKASLLEGAIRHVKQLQEQVKALEQQPKKKKKTAESVVFVKKSQLTSTTDTTSLNNNSSDIENLDDVSKWNSRVAKADVEARVSEKKVLIRVQCEKKEGIMVKTMKEIQKLHLSVINSSVMPFGRSILDITIIAEMEDEFNLSSQELARNIRVALLQSI 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00285 274 Pfam Helix-loop-helix DNA-binding domain 85 132 IPR011598 GO:0046983
Accr10g00285 274 Gene3D - 79 156 IPR036638 GO:0046983
Accr10g00285 274 PANTHER BHLH TRANSCRIPTION FACTOR 28 272 - -
Accr10g00285 274 SMART finulus 88 137 IPR011598 GO:0046983
Accr10g00285 274 MobiDBLite consensus disorder prediction 59 84 - -
Accr10g00285 274 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 83 144 IPR036638 GO:0046983
Accr10g00285 274 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 82 131 IPR011598 GO:0046983
Accr10g00285 274 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00285 Accr-Chr10 4831218 4833008 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00285 84 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 44.503 2.45e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr10g00285 HLH 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00285 - - pcin:129310385 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00498 9 5625932 5627613 Accr10g00285 10 4831218 4833008 CCT
Accr10g00285 10 4831218 4833008 Accr10g00285 10 4831218 4833008 ECH