Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00280 ATGATGGAAGCTGAATTCGTAAGCAACCCCAATTATTCATCAGCTAATAACGAATTTGAATATTATCAGGGGATGGAGGATACGACATTGTTTGAGCAGATACCGTTGGATTATTTTGATGGTCTTGATTTCCATTCCTTGGTTTCCGATTCCTGTAATCACCAGAATCCTCAGTCAATTACTATTGCGCCACCACCAGCTCCAACACCAAATAAGTCTGCGACTACTTCCAGACTTATTTCTTTTGAGCAATCCAATAATAATAATAATGCGCACCGATTTTACAATAACCTGGGTTCCAATGTGATCGAAACCCCGAATAAAGAAACCGTATTGAATTTTGAGTTTTTAAGCCGTCAAGGTGCATACTTTGAAGACATAAATGAGAGGCTAGCGGCGACGAACATGACCAGCACTGCCGTGACCAGAAATTCACTCCAAGCTCAAGATCACGTCTTGGCCGAAAGAAGACGAAGGGGAAAGCTGAACCAGAAGTTCATTGCTCTCTCCTCCATCATTCCTGGCCGCAAGAAGATGGACAAGGCATCAGTGTTGGGGGATGCTATAGAGTATGTAGAACAACTGAAGGAACGCCAGAAGGATCTGGAAGAACAAGTGGCCATGAAAAGAAAGGAATCAGTGAGAAGATGTATTCTCTTCGCCGGCGACAATGACAAGTCACCGTCATGTGAAGTTTCCGAGCAGGCATTGGCAGAAATGGAAGCCAAGGTTTTGGGTAAAGAAGTACTCATAAGAATCCAATGCGAGCAACAAAGAGGGTGCGAGGCTAAAATACTTAGAGAATTAGGAAACCTCCGTCTCAAAGCTAAAAGCAGTAGCATCTTGCCATTTGGTGAAACCACCCAATATATCACCATCATAGCTGAGATGGAGAAGGAGAACAGTATGACAGCAAATGATTTAGTGATAAGTCTGAGGAAGGGATTGACATTATTCGAATAG 963 0.4289 MMEAEFVSNPNYSSANNEFEYYQGMEDTTLFEQIPLDYFDGLDFHSLVSDSCNHQNPQSITIAPPPAPTPNKSATTSRLISFEQSNNNNNAHRFYNNLGSNVIETPNKETVLNFEFLSRQGAYFEDINERLAATNMTSTAVTRNSLQAQDHVLAERRRRGKLNQKFIALSSIIPGRKKMDKASVLGDAIEYVEQLKERQKDLEEQVAMKRKESVRRCILFAGDNDKSPSCEVSEQALAEMEAKVLGKEVLIRIQCEQQRGCEAKILRELGNLRLKAKSSSILPFGETTQYITIIAEMEKENSMTANDLVISLRKGLTLFE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00280 320 Coils Coil 185 212 - -
Accr10g00280 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 212 IPR036638 GO:0046983
Accr10g00280 320 MobiDBLite consensus disorder prediction 54 76 - -
Accr10g00280 320 Gene3D - 142 208 IPR036638 GO:0046983
Accr10g00280 320 SMART finulus 152 201 IPR011598 GO:0046983
Accr10g00280 320 Pfam Helix-loop-helix DNA-binding domain 149 195 IPR011598 GO:0046983
Accr10g00280 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Accr10g00280 320 PANTHER BHLH TRANSCRIPTION FACTOR 7 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00280 Accr-Chr10 4797269 4798598 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00280 65 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 39.773 1.54e-46 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr10g00280 HLH 6.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00280 - - pcin:129311489 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr10g00280 10 4797269 4798598 Accr10g00280 10 4797269 4798598 ECH