Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00279 ATGGAAGCTGAACTCGTAAGCAACCCTAATTACTCATCAGCTGAAAACGAATTTGATTATTATCAGGGGATGGACGATACTACATTGTTTGAGCAGTTACCGATGGATTATTTTGATGATCTTGATTTCCATTCCTTGGTTTCCGATTCCCCTAATCATCAGAATCCTCAGTCAATTATTATTGCGCCACCACCAGCTCCAACACCAAATAAGTCTGCGACTACTTCCAAACTTATTTCTTTTGAACAATCCAATAATAATAATAATAATAATGCGCACCGATTTTACAATAATCTGGGTTCCAATGACAAGCTCGAAACCCCGAAGGAAGAAAGCGTATTGAATTTTCAGTCTTTAAGCCGTCAAGGTGCATACTTTGAAGACATAAATAAGAGACTGACGGCGACGAACATGGCCGACAAAGCCGAGACAAGAAATCCACCCCAAGCTCAAGATCACGTCTTGGCCGAAAGAAGACGAAGGGAAAAGCTGAACCAGAAGTTCATTGCTCTCTCCTCCGTCATTCCTGGCCGCAAGAAGATGGACAAGGCATCAGTGTTGGAAGATGCTATAGAGTACGTAAAACAACTGAAGGAACGCCAGAAGATTCTGGAAGAACAAGTGGCCATGAAAAGAAAGGAATCAGCTGTGAGAAGATGTATTCTCTTCTCCGGCGACAATGACAAGTCGCCGTCCGGTGAAGTTTCCGAGCAGGCATTGGCAGAACTGGAAGCCAAGTTTTTGGGTAAAGAAGTAATGATCAGAATCCAATGCGAGCAACAAAGAGGGTGTGAGGCTAAAATACTTAGAGAATTAGGAAACCTTCGTCTCACAGTTAAAAGCAGTAGCATTTTGCCATTTGGTGAAACCACTCAATATATAACTATCATAGCTGAGATGGAGAAGGAGAACAGTATGACAGCAAATGATTTAGTGACATGTCTGATGAAGGCATTGACATTATTCCAATAG 972 0.4187 MEAELVSNPNYSSAENEFDYYQGMDDTTLFEQLPMDYFDDLDFHSLVSDSPNHQNPQSIIIAPPPAPTPNKSATTSKLISFEQSNNNNNNNAHRFYNNLGSNDKLETPKEESVLNFQSLSRQGAYFEDINKRLTATNMADKAETRNPPQAQDHVLAERRRREKLNQKFIALSSVIPGRKKMDKASVLEDAIEYVKQLKERQKILEEQVAMKRKESAVRRCILFSGDNDKSPSGEVSEQALAELEAKFLGKEVMIRIQCEQQRGCEAKILRELGNLRLTVKSSSILPFGETTQYITIIAEMEKENSMTANDLVTCLMKALTLFQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00279 323 Coils Coil 187 214 - -
Accr10g00279 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 216 IPR036638 GO:0046983
Accr10g00279 323 SMART finulus 154 203 IPR011598 GO:0046983
Accr10g00279 323 PANTHER BHLH TRANSCRIPTION FACTOR 28 319 - -
Accr10g00279 323 Gene3D - 143 209 IPR036638 GO:0046983
Accr10g00279 323 Pfam Helix-loop-helix DNA-binding domain 151 198 IPR011598 GO:0046983
Accr10g00279 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00279 Accr-Chr10 4766334 4767758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00279 144 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.486 1.67e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Accr10g00279 HLH 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00279 - - pcin:129311489 315.464