Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00268 ATGGCTCTTCCTTCTGATTCTACTTCCTCAGACCTCCAGCTTGTTCTAGGGCTTGGTTCTGACACCGCCGCTACTCCGAAGAAACCTTCCTCTAATCTCACTGTTACGAGTGGTGTGTGTGAGCCGTCCTTGACGTTGGCTCTCTCTGCAAGCCACACTAGTAATTACCTTGTTTCCAAGAGGATTGATGTGAATGTCAAAGCTGCTAATTGTTGTGAGGAAACCCCTCTTGATCACTTGTGTCGCCAGAATTCTTCGCCTCACAGTGTGGTCTCCTCCTTCTCCAGTGGGAGAGTAGTCAAGAGGGAGAGGGATCTCGGCAGCGAGGAGGTCGAGGCTGAGAGGCTTTCTTCCAGAGTCAGCGACGAAGACGAAGACGGCTCTAATGCTAGGAAGAAGCTCCGCCTCACCAAAGAACAGTCTGCTCTCCTTGAAGAAAGCTTCAAACAGCACAGCACACTCAACCCTAAGCAAAAGCAGGCCTTAGCCAGGCAGTTAAATCTACGGCCTCGCCAGGTTGAAGTTTGGTTCCAGAATCGAAGAGCCAGAACAAAGCTGAAGCAAACGGAGGTGGACTGCGAGTTCTTGAAGAAATGTTGTGAGACGCTGACAGATGAGAACAGGAGGCTCCAGAAGGAGCTGCAGGAGCTGAAGGCGCTGAAGCTATCTCAGCCGTTGTACGTGCCGATGACGGCGGCCACCCTCACCATGTGCCCGTCCTGCGAGAGGCTGGCTGGCGTCGGCGATGGTGGATCCAACAATAAGATCCCATTCTCCCTGACTCCCAAGGCCACTCACCTCTACAACCCCTTCAACAAGCCTTCAGCAGCATGTTGA 837 0.5281 MALPSDSTSSDLQLVLGLGSDTAATPKKPSSNLTVTSGVCEPSLTLALSASHTSNYLVSKRIDVNVKAANCCEETPLDHLCRQNSSPHSVVSSFSSGRVVKRERDLGSEEVEAERLSSRVSDEDEDGSNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLSQPLYVPMTAATLTMCPSCERLAGVGDGGSNNKIPFSLTPKATHLYNPFNKPSAAC 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00268 278 SUPERFAMILY Homeodomain-like 121 188 IPR009057 -
Accr10g00268 278 FunFam Homeobox-leucine zipper protein 18 117 192 - -
Accr10g00268 278 MobiDBLite consensus disorder prediction 103 132 - -
Accr10g00268 278 SMART halz 187 230 IPR003106 GO:0006355|GO:0043565
Accr10g00268 278 Gene3D - 124 192 - -
Accr10g00268 278 Pfam Homeodomain 131 185 IPR001356 GO:0003677
Accr10g00268 278 ProSiteProfiles 'Homeobox' domain profile. 127 187 IPR001356 GO:0003677
Accr10g00268 278 ProSitePatterns 'Homeobox' domain signature. 162 185 IPR017970 GO:0000981|GO:0006355
Accr10g00268 278 SMART HOX_1 129 191 IPR001356 GO:0003677
Accr10g00268 278 Pfam Homeobox associated leucine zipper 187 221 IPR003106 GO:0006355|GO:0043565
Accr10g00268 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 13 249 - -
Accr10g00268 278 Coils Coil 193 223 - -
Accr10g00268 278 CDD homeodomain 131 188 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00268 Accr-Chr10 4492651 4493799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00268 14 278 Homeobox Transcription Factor Family AT2G22800 58.947 6.71e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Accr10g00268 Homeodomain 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00268 K09338 - jre:109019457 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr9g00484 9 5483017 5484189 Accr10g00268 10 4492651 4493799 CCT