Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00248 ATGCTGGTTGTAATTCATTATGTTCGCAGCACATACAAATCTAGAAAAGAAAGCCAAGCAATAATTGAAAAGTTCCTGAAAGATTATAGAGCTTTCAAGCCCACCAGATATTCTTATGCTGAAATCAAGAGGATTACCAATCAATTTGAGGTTAAGTTGGGAGAAGGATCGTTTGGTACTGTATTTAAAGGAGACATTTCATCTGAGTTCAAAGTTGCAGTGAAAATGCTCACTAATTCTGAAGGAAACGGCACAGAGTTCGTCACTGAAGTTGGAACAATGGGCAAAATCCATCACGTCAACATTATTCGCTTAATGGGCTTCTGTGCTGATGGCTTTAGAAGAGCGCTGGTTTATGAATATTTTCCAAATGGTTCATTACAAAATTTTATAAATTCGCCAAATAATAGGCAAAACTTCATTGGTTGGAAAAAGCTCCATGAAATTGCTCTAGGCGTAGCCAAAGGAATTGAGTACCTTCATCAAGGCTGTGAGCAACGAATACTTCATTTCGACATCAAACCTCATAATGTTTTATTGGATAATGACTTCACTCCAAAAATATGTGATTTTGGTTTGGCAAAATTGTGTTCCAAAGATCAAAGCATGGTGTCAATGACTAACGCTAGAGGAACTTTGGGTTACATAGCTCCAGAGGTCTTCTCTCGAAATTTTGGAAATGTGTCTCATAAAGCAGATGTTTATAGCTTCGGGATGTTGTTACTTGAATTAACAGGGGGAAGAAAAATTACACATGACACAAAAGAAAATGCTCACCACATTCACTATCCTGAATGGATCTATAATATTTTAGAAGAAAGGGATGATGTTAGGATTCATATTGAGGAAGAAAGCGATGCTAAAATTGCAAAAAGGTTGGGAATAGTGGGACTATGGTGCATTCAGTGGCATCCCGTGGATCGACCATCAATGCAAGCGGTGGTTAAAACGTTAGAAGGAGAAGGAGACAAATTACCAATACCTCCAAATCCTTTTAATTCTGAAGGCACCTCAACAAGAAAAAGGGCCAGTGCGCCTATAAGAAGCCTGATGCAAGGATTAGAAATAATCCAAGAAGTAGAGTGA 1086 0.3812 MLVVIHYVRSTYKSRKESQAIIEKFLKDYRAFKPTRYSYAEIKRITNQFEVKLGEGSFGTVFKGDISSEFKVAVKMLTNSEGNGTEFVTEVGTMGKIHHVNIIRLMGFCADGFRRALVYEYFPNGSLQNFINSPNNRQNFIGWKKLHEIALGVAKGIEYLHQGCEQRILHFDIKPHNVLLDNDFTPKICDFGLAKLCSKDQSMVSMTNARGTLGYIAPEVFSRNFGNVSHKADVYSFGMLLLELTGGRKITHDTKENAHHIHYPEWIYNILEERDDVRIHIEEESDAKIAKRLGIVGLWCIQWHPVDRPSMQAVVKTLEGEGDKLPIPPNPFNSEGTSTRKRASAPIRSLMQGLEIIQEVE 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00248 361 FunFam PR5-like receptor kinase 122 329 - -
Accr10g00248 361 SMART serkin_6 47 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00248 361 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Accr10g00248 361 Gene3D Transferase(Phosphotransferase) domain 1 122 324 - -
Accr10g00248 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Accr10g00248 361 Pfam Protein kinase domain 50 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00248 361 PANTHER RUST RESISTANCE KINASE LR10-RELATED 19 337 IPR045874 GO:0004672
Accr10g00248 361 ProSiteProfiles Protein kinase domain profile. 47 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Accr10g00248 361 SUPERFAMILY Protein kinase-like (PK-like) 30 319 IPR011009 -
Accr10g00248 361 MobiDBLite consensus disorder prediction 324 344 - -
Accr10g00248 361 FunFam serine/threonine-protein kinase PBS1-like 14 121 - -
Accr10g00248 361 Gene3D Phosphorylase Kinase; domain 1 21 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00248 Accr-Chr10 4171241 4172326 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00248 27 331 Receptor kinase-like Gene Family AT1G66910 49.518 1.29e-106 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Accr10g00248 Pkinase 2.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00248 - - aprc:113873873 535.413